If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ), 'gf_id' => 'HOM05D000680', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000680' ), 'data_identifier' => 'HOM05D000680', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ) $gf_id = 'HOM05D000680' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000680' ) $data_identifier = 'HOM05D000680' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 13, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 23, 'bra' => (int) 17, 'can' => (int) 31, 'cansat' => (int) 1, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 6, 'col' => (int) 33, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 16, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 32, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 41, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 69, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 4, 'lsa' => (int) 17, 'mes' => (int) 2, 'mpo' => (int) 1, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 28, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 21, 'nnu' => (int) 15, 'oeu' => (int) 20, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 2, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 4, 'sci' => (int) 13, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 8, 'spa' => (int) 3, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 1, 'esa' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb436760' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ), 'gf_id' => 'HOM05D000680', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000680' ), 'data_identifier' => 'HOM05D000680', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ) $gf_id = 'HOM05D000680' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000680' ) $data_identifier = 'HOM05D000680' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 13, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 23, 'bra' => (int) 17, 'can' => (int) 31, 'cansat' => (int) 1, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 6, 'col' => (int) 33, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 16, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 32, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 41, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 69, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 4, 'lsa' => (int) 17, 'mes' => (int) 2, 'mpo' => (int) 1, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 28, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 21, 'nnu' => (int) 15, 'oeu' => (int) 20, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 2, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 4, 'sci' => (int) 13, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 8, 'spa' => (int) 3, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 1, 'esa' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb436760' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ), 'gf_id' => 'HOM05D000680', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000680' ), 'data_identifier' => 'HOM05D000680', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ) $gf_id = 'HOM05D000680' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000680' ) $data_identifier = 'HOM05D000680' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 13, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 23, 'bra' => (int) 17, 'can' => (int) 31, 'cansat' => (int) 1, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 6, 'col' => (int) 33, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 16, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 32, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 41, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 69, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 4, 'lsa' => (int) 17, 'mes' => (int) 2, 'mpo' => (int) 1, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 28, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 21, 'nnu' => (int) 15, 'oeu' => (int) 20, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 2, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 4, 'sci' => (int) 13, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 8, 'spa' => (int) 3, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 1, 'esa' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb436760' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ), 'gf_id' => 'HOM05D000680', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000680' ), 'data_identifier' => 'HOM05D000680', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ) $gf_id = 'HOM05D000680' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000680' ) $data_identifier = 'HOM05D000680' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 13, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 23, 'bra' => (int) 17, 'can' => (int) 31, 'cansat' => (int) 1, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 6, 'col' => (int) 33, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 16, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 32, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 41, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 69, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 4, 'lsa' => (int) 17, 'mes' => (int) 2, 'mpo' => (int) 1, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 28, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 21, 'nnu' => (int) 15, 'oeu' => (int) 20, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 2, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 4, 'sci' => (int) 13, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 8, 'spa' => (int) 3, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 1, 'esa' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb436760' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ), 'gf_id' => 'HOM05D000680', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000680' ), 'data_identifier' => 'HOM05D000680', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ) $gf_id = 'HOM05D000680' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000680' ) $data_identifier = 'HOM05D000680' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 13, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 23, 'bra' => (int) 17, 'can' => (int) 31, 'cansat' => (int) 1, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 6, 'col' => (int) 33, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 16, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 32, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 41, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 69, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 4, 'lsa' => (int) 17, 'mes' => (int) 2, 'mpo' => (int) 1, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 28, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 21, 'nnu' => (int) 15, 'oeu' => (int) 20, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 2, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 4, 'sci' => (int) 13, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 8, 'spa' => (int) 3, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 1, 'esa' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb436760' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ), 'gf_id' => 'HOM05D000680', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000680' ), 'data_identifier' => 'HOM05D000680', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ) $gf_id = 'HOM05D000680' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000680' ) $data_identifier = 'HOM05D000680' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 13, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 23, 'bra' => (int) 17, 'can' => (int) 31, 'cansat' => (int) 1, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 6, 'col' => (int) 33, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 16, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 32, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 41, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 69, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 4, 'lsa' => (int) 17, 'mes' => (int) 2, 'mpo' => (int) 1, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 28, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 21, 'nnu' => (int) 15, 'oeu' => (int) 20, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 2, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 4, 'sci' => (int) 13, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 8, 'spa' => (int) 3, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 1, 'esa' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb436760' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ), 'gf_id' => 'HOM05D000680', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000680' ), 'data_identifier' => 'HOM05D000680', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ) $gf_id = 'HOM05D000680' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000680' ) $data_identifier = 'HOM05D000680' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 13, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 23, 'bra' => (int) 17, 'can' => (int) 31, 'cansat' => (int) 1, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 6, 'col' => (int) 33, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 16, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 32, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 41, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 69, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 4, 'lsa' => (int) 17, 'mes' => (int) 2, 'mpo' => (int) 1, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 28, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 21, 'nnu' => (int) 15, 'oeu' => (int) 20, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 2, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 4, 'sci' => (int) 13, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 8, 'spa' => (int) 3, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 1, 'esa' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb436760' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 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'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ), 'gf_id' => 'HOM05D000680', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000680' ), 'data_identifier' => 'HOM05D000680', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ) $gf_id = 'HOM05D000680' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000680' ) $data_identifier = 'HOM05D000680' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 13, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 23, 'bra' => (int) 17, 'can' => (int) 31, 'cansat' => (int) 1, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 6, 'col' => (int) 33, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 16, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 32, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 41, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 69, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 4, 'lsa' => (int) 17, 'mes' => (int) 2, 'mpo' => (int) 1, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 28, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 21, 'nnu' => (int) 15, 'oeu' => (int) 20, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 2, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 4, 'sci' => (int) 13, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 8, 'spa' => (int) 3, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 1, 'esa' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb436760' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ), 'gf_id' => 'HOM05D000680', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000680' ), 'data_identifier' => 'HOM05D000680', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ) $gf_id = 'HOM05D000680' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000680' ) $data_identifier = 'HOM05D000680' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 13, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 23, 'bra' => (int) 17, 'can' => (int) 31, 'cansat' => (int) 1, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 6, 'col' => (int) 33, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 16, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 32, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 41, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 69, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 4, 'lsa' => (int) 17, 'mes' => (int) 2, 'mpo' => (int) 1, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 28, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 21, 'nnu' => (int) 15, 'oeu' => (int) 20, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 2, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 4, 'sci' => (int) 13, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 8, 'spa' => (int) 3, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 1, 'esa' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb436760' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ), 'gf_id' => 'HOM05D000680', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000680' ), 'data_identifier' => 'HOM05D000680', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ) $gf_id = 'HOM05D000680' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000680' ) $data_identifier = 'HOM05D000680' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 13, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 23, 'bra' => (int) 17, 'can' => (int) 31, 'cansat' => (int) 1, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 6, 'col' => (int) 33, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 16, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 32, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 41, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 69, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 4, 'lsa' => (int) 17, 'mes' => (int) 2, 'mpo' => (int) 1, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 28, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 21, 'nnu' => (int) 15, 'oeu' => (int) 20, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 2, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 4, 'sci' => (int) 13, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 8, 'spa' => (int) 3, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 1, 'esa' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb436760' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ), 'gf_id' => 'HOM05D000680', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000680' ), 'data_identifier' => 'HOM05D000680', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ) $gf_id = 'HOM05D000680' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000680' ) $data_identifier = 'HOM05D000680' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 13, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 23, 'bra' => (int) 17, 'can' => (int) 31, 'cansat' => (int) 1, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 6, 'col' => (int) 33, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 16, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 32, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 41, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 69, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 4, 'lsa' => (int) 17, 'mes' => (int) 2, 'mpo' => (int) 1, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 28, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 21, 'nnu' => (int) 15, 'oeu' => (int) 20, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 2, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 4, 'sci' => (int) 13, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 8, 'spa' => (int) 3, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 1, 'esa' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb436760' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ), 'gf_id' => 'HOM05D000680', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000680' ), 'data_identifier' => 'HOM05D000680', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ) $gf_id = 'HOM05D000680' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000680' ) $data_identifier = 'HOM05D000680' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 13, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 23, 'bra' => (int) 17, 'can' => (int) 31, 'cansat' => (int) 1, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 6, 'col' => (int) 33, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 16, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 32, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 41, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 69, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 4, 'lsa' => (int) 17, 'mes' => (int) 2, 'mpo' => (int) 1, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 28, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 21, 'nnu' => (int) 15, 'oeu' => (int) 20, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 2, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 4, 'sci' => (int) 13, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 8, 'spa' => (int) 3, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 1, 'esa' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb436760' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ), 'gf_id' => 'HOM05D000680', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000680' ), 'data_identifier' => 'HOM05D000680', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ) $gf_id = 'HOM05D000680' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000680' ) $data_identifier = 'HOM05D000680' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 13, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 23, 'bra' => (int) 17, 'can' => (int) 31, 'cansat' => (int) 1, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 6, 'col' => (int) 33, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 16, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 32, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 41, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 69, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 4, 'lsa' => (int) 17, 'mes' => (int) 2, 'mpo' => (int) 1, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 28, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 21, 'nnu' => (int) 15, 'oeu' => (int) 20, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 2, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 4, 'sci' => (int) 13, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 8, 'spa' => (int) 3, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 1, 'esa' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb436760' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 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'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ), 'gf_id' => 'HOM05D000680', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000680' ), 'data_identifier' => 'HOM05D000680', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ) $gf_id = 'HOM05D000680' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000680' ) $data_identifier = 'HOM05D000680' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 13, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 23, 'bra' => (int) 17, 'can' => (int) 31, 'cansat' => (int) 1, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 6, 'col' => (int) 33, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 16, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 32, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 41, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 69, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 4, 'lsa' => (int) 17, 'mes' => (int) 2, 'mpo' => (int) 1, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 28, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 21, 'nnu' => (int) 15, 'oeu' => (int) 20, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 2, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 4, 'sci' => (int) 13, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 8, 'spa' => (int) 3, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 1, 'esa' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb436760' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ), 'gf_id' => 'HOM05D000680', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000680' ), 'data_identifier' => 'HOM05D000680', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ) $gf_id = 'HOM05D000680' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000680' ) $data_identifier = 'HOM05D000680' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 13, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 23, 'bra' => (int) 17, 'can' => (int) 31, 'cansat' => (int) 1, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 6, 'col' => (int) 33, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 16, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 32, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 41, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 69, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 4, 'lsa' => (int) 17, 'mes' => (int) 2, 'mpo' => (int) 1, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 28, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 21, 'nnu' => (int) 15, 'oeu' => (int) 20, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 2, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 4, 'sci' => (int) 13, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 8, 'spa' => (int) 3, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 1, 'esa' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb436760' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ), 'gf_id' => 'HOM05D000680', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000680' ), 'data_identifier' => 'HOM05D000680', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ) $gf_id = 'HOM05D000680' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000680' ) $data_identifier = 'HOM05D000680' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 13, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 23, 'bra' => (int) 17, 'can' => (int) 31, 'cansat' => (int) 1, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 6, 'col' => (int) 33, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 16, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 32, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 41, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 69, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 4, 'lsa' => (int) 17, 'mes' => (int) 2, 'mpo' => (int) 1, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 28, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 21, 'nnu' => (int) 15, 'oeu' => (int) 20, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 2, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 4, 'sci' => (int) 13, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 8, 'spa' => (int) 3, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 1, 'esa' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb436760' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ), 'gf_id' => 'HOM05D000680', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000680' ), 'data_identifier' => 'HOM05D000680', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ) $gf_id = 'HOM05D000680' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000680' ) $data_identifier = 'HOM05D000680' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 13, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 23, 'bra' => (int) 17, 'can' => (int) 31, 'cansat' => (int) 1, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 6, 'col' => (int) 33, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 16, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 32, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 41, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 69, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 4, 'lsa' => (int) 17, 'mes' => (int) 2, 'mpo' => (int) 1, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 28, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 21, 'nnu' => (int) 15, 'oeu' => (int) 20, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 2, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 4, 'sci' => (int) 13, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 8, 'spa' => (int) 3, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 1, 'esa' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb436760' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ), 'gf_id' => 'HOM05D000680', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000680' ), 'data_identifier' => 'HOM05D000680', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ) $gf_id = 'HOM05D000680' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000680' ) $data_identifier = 'HOM05D000680' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 13, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 23, 'bra' => (int) 17, 'can' => (int) 31, 'cansat' => (int) 1, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 6, 'col' => (int) 33, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 16, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 32, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 41, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 69, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 4, 'lsa' => (int) 17, 'mes' => (int) 2, 'mpo' => (int) 1, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 28, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 21, 'nnu' => (int) 15, 'oeu' => (int) 20, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 2, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 4, 'sci' => (int) 13, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 8, 'spa' => (int) 3, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 1, 'esa' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb436760' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ), 'gf_id' => 'HOM05D000680', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000680' ), 'data_identifier' => 'HOM05D000680', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ) $gf_id = 'HOM05D000680' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000680' ) $data_identifier = 'HOM05D000680' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 13, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 23, 'bra' => (int) 17, 'can' => (int) 31, 'cansat' => (int) 1, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 6, 'col' => (int) 33, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 16, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 32, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 41, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 69, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 4, 'lsa' => (int) 17, 'mes' => (int) 2, 'mpo' => (int) 1, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 28, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 21, 'nnu' => (int) 15, 'oeu' => (int) 20, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 2, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 4, 'sci' => (int) 13, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 8, 'spa' => (int) 3, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 1, 'esa' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb436760' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 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'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ), 'gf_id' => 'HOM05D000680', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000680' ), 'data_identifier' => 'HOM05D000680', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ) $gf_id = 'HOM05D000680' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000680' ) $data_identifier = 'HOM05D000680' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 13, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 23, 'bra' => (int) 17, 'can' => (int) 31, 'cansat' => (int) 1, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 6, 'col' => (int) 33, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 16, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 32, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 41, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 69, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 4, 'lsa' => (int) 17, 'mes' => (int) 2, 'mpo' => (int) 1, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 28, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 21, 'nnu' => (int) 15, 'oeu' => (int) 20, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 2, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 4, 'sci' => (int) 13, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 8, 'spa' => (int) 3, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 1, 'esa' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb436760' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ), 'gf_id' => 'HOM05D000680', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000680' ), 'data_identifier' => 'HOM05D000680', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ) $gf_id = 'HOM05D000680' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000680' ) $data_identifier = 'HOM05D000680' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 13, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 23, 'bra' => (int) 17, 'can' => (int) 31, 'cansat' => (int) 1, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 6, 'col' => (int) 33, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 16, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 32, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 41, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 69, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 4, 'lsa' => (int) 17, 'mes' => (int) 2, 'mpo' => (int) 1, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 28, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 21, 'nnu' => (int) 15, 'oeu' => (int) 20, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 2, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 4, 'sci' => (int) 13, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 8, 'spa' => (int) 3, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 1, 'esa' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb436760' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ), 'gf_id' => 'HOM05D000680', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000680' ), 'data_identifier' => 'HOM05D000680', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ) $gf_id = 'HOM05D000680' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000680' ) $data_identifier = 'HOM05D000680' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 13, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 23, 'bra' => (int) 17, 'can' => (int) 31, 'cansat' => (int) 1, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 6, 'col' => (int) 33, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 16, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 32, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 41, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 69, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 4, 'lsa' => (int) 17, 'mes' => (int) 2, 'mpo' => (int) 1, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 28, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 21, 'nnu' => (int) 15, 'oeu' => (int) 20, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 2, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 4, 'sci' => (int) 13, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 8, 'spa' => (int) 3, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 1, 'esa' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb436760' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ), 'gf_id' => 'HOM05D000680', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000680' ), 'data_identifier' => 'HOM05D000680', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ) $gf_id = 'HOM05D000680' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000680' ) $data_identifier = 'HOM05D000680' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 13, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 23, 'bra' => (int) 17, 'can' => (int) 31, 'cansat' => (int) 1, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 6, 'col' => (int) 33, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 16, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 32, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 41, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 69, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 4, 'lsa' => (int) 17, 'mes' => (int) 2, 'mpo' => (int) 1, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 28, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 21, 'nnu' => (int) 15, 'oeu' => (int) 20, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 2, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 4, 'sci' => (int) 13, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 8, 'spa' => (int) 3, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 1, 'esa' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb436760' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ), 'gf_id' => 'HOM05D000680', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000680' ), 'data_identifier' => 'HOM05D000680', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ) $gf_id = 'HOM05D000680' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000680' ) $data_identifier = 'HOM05D000680' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 13, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 23, 'bra' => (int) 17, 'can' => (int) 31, 'cansat' => (int) 1, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 6, 'col' => (int) 33, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 16, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 32, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 41, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 69, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 4, 'lsa' => (int) 17, 'mes' => (int) 2, 'mpo' => (int) 1, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 28, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 21, 'nnu' => (int) 15, 'oeu' => (int) 20, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 2, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 4, 'sci' => (int) 13, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 8, 'spa' => (int) 3, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 1, 'esa' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb436760' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ), 'gf_id' => 'HOM05D000680', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000680' ), 'data_identifier' => 'HOM05D000680', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ) $gf_id = 'HOM05D000680' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000680' ) $data_identifier = 'HOM05D000680' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 13, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 23, 'bra' => (int) 17, 'can' => (int) 31, 'cansat' => (int) 1, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 6, 'col' => (int) 33, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 16, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 32, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 41, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 69, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 4, 'lsa' => (int) 17, 'mes' => (int) 2, 'mpo' => (int) 1, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 28, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 21, 'nnu' => (int) 15, 'oeu' => (int) 20, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 2, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 4, 'sci' => (int) 13, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 8, 'spa' => (int) 3, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 1, 'esa' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb436760' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 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'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ), 'gf_id' => 'HOM05D000680', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000680' ), 'data_identifier' => 'HOM05D000680', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ) $gf_id = 'HOM05D000680' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000680' ) $data_identifier = 'HOM05D000680' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 13, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 23, 'bra' => (int) 17, 'can' => (int) 31, 'cansat' => (int) 1, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 6, 'col' => (int) 33, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 16, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 32, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 41, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 69, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 4, 'lsa' => (int) 17, 'mes' => (int) 2, 'mpo' => (int) 1, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 28, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 21, 'nnu' => (int) 15, 'oeu' => (int) 20, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 2, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 4, 'sci' => (int) 13, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 8, 'spa' => (int) 3, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 1, 'esa' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb436760' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ), 'gf_id' => 'HOM05D000680', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000680' ), 'data_identifier' => 'HOM05D000680', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ) $gf_id = 'HOM05D000680' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000680' ) $data_identifier = 'HOM05D000680' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 13, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 23, 'bra' => (int) 17, 'can' => (int) 31, 'cansat' => (int) 1, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 6, 'col' => (int) 33, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 16, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 32, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 41, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 69, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 4, 'lsa' => (int) 17, 'mes' => (int) 2, 'mpo' => (int) 1, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 28, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 21, 'nnu' => (int) 15, 'oeu' => (int) 20, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 2, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 4, 'sci' => (int) 13, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 8, 'spa' => (int) 3, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 1, 'esa' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb436760' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ), 'gf_id' => 'HOM05D000680', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000680' ), 'data_identifier' => 'HOM05D000680', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ) $gf_id = 'HOM05D000680' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000680' ) $data_identifier = 'HOM05D000680' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 13, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 23, 'bra' => (int) 17, 'can' => (int) 31, 'cansat' => (int) 1, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 6, 'col' => (int) 33, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 16, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 32, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 41, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 69, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 4, 'lsa' => (int) 17, 'mes' => (int) 2, 'mpo' => (int) 1, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 28, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 21, 'nnu' => (int) 15, 'oeu' => (int) 20, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 2, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 4, 'sci' => (int) 13, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 8, 'spa' => (int) 3, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 1, 'esa' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb436760' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ), 'gf_id' => 'HOM05D000680', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000680' ), 'data_identifier' => 'HOM05D000680', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ) $gf_id = 'HOM05D000680' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000680' ) $data_identifier = 'HOM05D000680' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 13, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 23, 'bra' => (int) 17, 'can' => (int) 31, 'cansat' => (int) 1, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 6, 'col' => (int) 33, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 16, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 32, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 41, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 69, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 4, 'lsa' => (int) 17, 'mes' => (int) 2, 'mpo' => (int) 1, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 28, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 21, 'nnu' => (int) 15, 'oeu' => (int) 20, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 2, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 4, 'sci' => (int) 13, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 8, 'spa' => (int) 3, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 1, 'esa' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb436760' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ), 'gf_id' => 'HOM05D000680', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000680' ), 'data_identifier' => 'HOM05D000680', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ) $gf_id = 'HOM05D000680' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000680' ) $data_identifier = 'HOM05D000680' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 13, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 23, 'bra' => (int) 17, 'can' => (int) 31, 'cansat' => (int) 1, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 6, 'col' => (int) 33, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 16, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 32, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 41, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 69, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 4, 'lsa' => (int) 17, 'mes' => (int) 2, 'mpo' => (int) 1, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 28, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 21, 'nnu' => (int) 15, 'oeu' => (int) 20, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 2, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 4, 'sci' => (int) 13, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 8, 'spa' => (int) 3, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 1, 'esa' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb436760' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ), 'gf_id' => 'HOM05D000680', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000680' ), 'data_identifier' => 'HOM05D000680', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ) $gf_id = 'HOM05D000680' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000680' ) $data_identifier = 'HOM05D000680' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 13, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 23, 'bra' => (int) 17, 'can' => (int) 31, 'cansat' => (int) 1, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 6, 'col' => (int) 33, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 16, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 32, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 41, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 69, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 4, 'lsa' => (int) 17, 'mes' => (int) 2, 'mpo' => (int) 1, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 28, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 21, 'nnu' => (int) 15, 'oeu' => (int) 20, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 2, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 4, 'sci' => (int) 13, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 8, 'spa' => (int) 3, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 1, 'esa' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb436760' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 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'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ), 'gf_id' => 'HOM05D000680', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000680' ), 'data_identifier' => 'HOM05D000680', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ) $gf_id = 'HOM05D000680' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000680' ) $data_identifier = 'HOM05D000680' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 13, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 23, 'bra' => (int) 17, 'can' => (int) 31, 'cansat' => (int) 1, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 6, 'col' => (int) 33, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 16, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 32, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 41, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 69, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 4, 'lsa' => (int) 17, 'mes' => (int) 2, 'mpo' => (int) 1, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 28, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 21, 'nnu' => (int) 15, 'oeu' => (int) 20, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 2, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 4, 'sci' => (int) 13, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 8, 'spa' => (int) 3, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 1, 'esa' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb436760' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ), 'gf_id' => 'HOM05D000680', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000680' ), 'data_identifier' => 'HOM05D000680', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ) $gf_id = 'HOM05D000680' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000680' ) $data_identifier = 'HOM05D000680' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 13, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 23, 'bra' => (int) 17, 'can' => (int) 31, 'cansat' => (int) 1, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 6, 'col' => (int) 33, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 16, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 32, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 41, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 69, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 4, 'lsa' => (int) 17, 'mes' => (int) 2, 'mpo' => (int) 1, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 28, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 21, 'nnu' => (int) 15, 'oeu' => (int) 20, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 2, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 4, 'sci' => (int) 13, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 8, 'spa' => (int) 3, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 1, 'esa' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb436760' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ), 'gf_id' => 'HOM05D000680', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000680' ), 'data_identifier' => 'HOM05D000680', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ) $gf_id = 'HOM05D000680' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000680' ) $data_identifier = 'HOM05D000680' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 13, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 23, 'bra' => (int) 17, 'can' => (int) 31, 'cansat' => (int) 1, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 6, 'col' => (int) 33, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 16, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 32, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 41, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 69, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 4, 'lsa' => (int) 17, 'mes' => (int) 2, 'mpo' => (int) 1, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 28, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 21, 'nnu' => (int) 15, 'oeu' => (int) 20, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 2, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 4, 'sci' => (int) 13, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 8, 'spa' => (int) 3, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 1, 'esa' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb436760' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ), 'gf_id' => 'HOM05D000680', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000680' ), 'data_identifier' => 'HOM05D000680', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ) $gf_id = 'HOM05D000680' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000680' ) $data_identifier = 'HOM05D000680' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 13, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 23, 'bra' => (int) 17, 'can' => (int) 31, 'cansat' => (int) 1, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 6, 'col' => (int) 33, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 16, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 32, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 41, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 69, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 4, 'lsa' => (int) 17, 'mes' => (int) 2, 'mpo' => (int) 1, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 28, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 21, 'nnu' => (int) 15, 'oeu' => (int) 20, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 2, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 4, 'sci' => (int) 13, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 8, 'spa' => (int) 3, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 1, 'esa' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb436760' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ), 'gf_id' => 'HOM05D000680', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000680' ), 'data_identifier' => 'HOM05D000680', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ) $gf_id = 'HOM05D000680' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000680' ) $data_identifier = 'HOM05D000680' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 13, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 23, 'bra' => (int) 17, 'can' => (int) 31, 'cansat' => (int) 1, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 6, 'col' => (int) 33, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 16, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 32, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 41, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 69, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 4, 'lsa' => (int) 17, 'mes' => (int) 2, 'mpo' => (int) 1, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 28, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 21, 'nnu' => (int) 15, 'oeu' => (int) 20, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 2, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 4, 'sci' => (int) 13, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 8, 'spa' => (int) 3, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 1, 'esa' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb436760' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ), 'gf_id' => 'HOM05D000680', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000680' ), 'data_identifier' => 'HOM05D000680', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ) $gf_id = 'HOM05D000680' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000680' ) $data_identifier = 'HOM05D000680' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 13, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 23, 'bra' => (int) 17, 'can' => (int) 31, 'cansat' => (int) 1, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 6, 'col' => (int) 33, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 16, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 32, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 41, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 69, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 4, 'lsa' => (int) 17, 'mes' => (int) 2, 'mpo' => (int) 1, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 28, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 21, 'nnu' => (int) 15, 'oeu' => (int) 20, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 2, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 4, 'sci' => (int) 13, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 8, 'spa' => (int) 3, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 1, 'esa' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb436760' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 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'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ), 'gf_id' => 'HOM05D000680', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000680' ), 'data_identifier' => 'HOM05D000680', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ) $gf_id = 'HOM05D000680' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000680' ) $data_identifier = 'HOM05D000680' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 13, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 23, 'bra' => (int) 17, 'can' => (int) 31, 'cansat' => (int) 1, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 6, 'col' => (int) 33, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 16, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 32, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 41, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 69, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 4, 'lsa' => (int) 17, 'mes' => (int) 2, 'mpo' => (int) 1, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 28, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 21, 'nnu' => (int) 15, 'oeu' => (int) 20, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 2, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 4, 'sci' => (int) 13, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 8, 'spa' => (int) 3, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 1, 'esa' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb436760' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ), 'gf_id' => 'HOM05D000680', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000680' ), 'data_identifier' => 'HOM05D000680', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ) $gf_id = 'HOM05D000680' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000680' ) $data_identifier = 'HOM05D000680' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 13, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 23, 'bra' => (int) 17, 'can' => (int) 31, 'cansat' => (int) 1, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 6, 'col' => (int) 33, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 16, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 32, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 41, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 69, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 4, 'lsa' => (int) 17, 'mes' => (int) 2, 'mpo' => (int) 1, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 28, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 21, 'nnu' => (int) 15, 'oeu' => (int) 20, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 2, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 4, 'sci' => (int) 13, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 8, 'spa' => (int) 3, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 1, 'esa' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb436760' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ), 'gf_id' => 'HOM05D000680', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000680' ), 'data_identifier' => 'HOM05D000680', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ) $gf_id = 'HOM05D000680' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000680' ) $data_identifier = 'HOM05D000680' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 13, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 23, 'bra' => (int) 17, 'can' => (int) 31, 'cansat' => (int) 1, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 6, 'col' => (int) 33, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 16, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 32, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 41, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 69, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 4, 'lsa' => (int) 17, 'mes' => (int) 2, 'mpo' => (int) 1, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 28, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 21, 'nnu' => (int) 15, 'oeu' => (int) 20, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 2, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 4, 'sci' => (int) 13, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 8, 'spa' => (int) 3, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 1, 'esa' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb436760' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ), 'gf_id' => 'HOM05D000680', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000680' ), 'data_identifier' => 'HOM05D000680', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ) $gf_id = 'HOM05D000680' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000680' ) $data_identifier = 'HOM05D000680' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 13, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 23, 'bra' => (int) 17, 'can' => (int) 31, 'cansat' => (int) 1, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 6, 'col' => (int) 33, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 16, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 32, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 41, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 69, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 4, 'lsa' => (int) 17, 'mes' => (int) 2, 'mpo' => (int) 1, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 28, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 21, 'nnu' => (int) 15, 'oeu' => (int) 20, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 2, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 4, 'sci' => (int) 13, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 8, 'spa' => (int) 3, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 1, 'esa' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb436760' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ), 'gf_id' => 'HOM05D000680', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000680' ), 'data_identifier' => 'HOM05D000680', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ) $gf_id = 'HOM05D000680' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000680' ) $data_identifier = 'HOM05D000680' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 13, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 23, 'bra' => (int) 17, 'can' => (int) 31, 'cansat' => (int) 1, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 6, 'col' => (int) 33, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 16, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 32, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 41, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 69, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 4, 'lsa' => (int) 17, 'mes' => (int) 2, 'mpo' => (int) 1, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 28, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 21, 'nnu' => (int) 15, 'oeu' => (int) 20, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 2, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 4, 'sci' => (int) 13, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 8, 'spa' => (int) 3, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 1, 'esa' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb436760' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ), 'gf_id' => 'HOM05D000680', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000680' ), 'data_identifier' => 'HOM05D000680', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ) $gf_id = 'HOM05D000680' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000680' ) $data_identifier = 'HOM05D000680' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 13, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 23, 'bra' => (int) 17, 'can' => (int) 31, 'cansat' => (int) 1, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 6, 'col' => (int) 33, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 16, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 32, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 41, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 69, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 4, 'lsa' => (int) 17, 'mes' => (int) 2, 'mpo' => (int) 1, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 28, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 21, 'nnu' => (int) 15, 'oeu' => (int) 20, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 2, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 4, 'sci' => (int) 13, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 8, 'spa' => (int) 3, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 1, 'esa' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb436760' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 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'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ), 'gf_id' => 'HOM05D000680', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000680' ), 'data_identifier' => 'HOM05D000680', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ) $gf_id = 'HOM05D000680' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000680' ) $data_identifier = 'HOM05D000680' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 13, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 23, 'bra' => (int) 17, 'can' => (int) 31, 'cansat' => (int) 1, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 6, 'col' => (int) 33, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 16, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 32, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 41, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 69, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 4, 'lsa' => (int) 17, 'mes' => (int) 2, 'mpo' => (int) 1, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 28, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 21, 'nnu' => (int) 15, 'oeu' => (int) 20, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 2, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 4, 'sci' => (int) 13, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 8, 'spa' => (int) 3, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 1, 'esa' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb436760' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ), 'gf_id' => 'HOM05D000680', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000680' ), 'data_identifier' => 'HOM05D000680', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ) $gf_id = 'HOM05D000680' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000680' ) $data_identifier = 'HOM05D000680' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 13, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 23, 'bra' => (int) 17, 'can' => (int) 31, 'cansat' => (int) 1, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 6, 'col' => (int) 33, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 16, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 32, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 41, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 69, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 4, 'lsa' => (int) 17, 'mes' => (int) 2, 'mpo' => (int) 1, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 28, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 21, 'nnu' => (int) 15, 'oeu' => (int) 20, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 2, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 4, 'sci' => (int) 13, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 8, 'spa' => (int) 3, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 1, 'esa' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb436760' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ), 'gf_id' => 'HOM05D000680', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000680' ), 'data_identifier' => 'HOM05D000680', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ) $gf_id = 'HOM05D000680' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000680' ) $data_identifier = 'HOM05D000680' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 13, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 23, 'bra' => (int) 17, 'can' => (int) 31, 'cansat' => (int) 1, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 6, 'col' => (int) 33, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 16, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 32, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 41, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 69, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 4, 'lsa' => (int) 17, 'mes' => (int) 2, 'mpo' => (int) 1, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 28, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 21, 'nnu' => (int) 15, 'oeu' => (int) 20, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 2, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 4, 'sci' => (int) 13, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 8, 'spa' => (int) 3, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 1, 'esa' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb436760' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ), 'gf_id' => 'HOM05D000680', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000680' ), 'data_identifier' => 'HOM05D000680', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ) $gf_id = 'HOM05D000680' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000680' ) $data_identifier = 'HOM05D000680' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 13, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 23, 'bra' => (int) 17, 'can' => (int) 31, 'cansat' => (int) 1, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 6, 'col' => (int) 33, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 16, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 32, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 41, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 69, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 4, 'lsa' => (int) 17, 'mes' => (int) 2, 'mpo' => (int) 1, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 28, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 21, 'nnu' => (int) 15, 'oeu' => (int) 20, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 2, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 4, 'sci' => (int) 13, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 8, 'spa' => (int) 3, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 1, 'esa' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb436760' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ), 'gf_id' => 'HOM05D000680', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000680' ), 'data_identifier' => 'HOM05D000680', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ) $gf_id = 'HOM05D000680' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000680' ) $data_identifier = 'HOM05D000680' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 13, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 23, 'bra' => (int) 17, 'can' => (int) 31, 'cansat' => (int) 1, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 6, 'col' => (int) 33, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 16, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 32, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 41, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 69, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 4, 'lsa' => (int) 17, 'mes' => (int) 2, 'mpo' => (int) 1, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 28, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 21, 'nnu' => (int) 15, 'oeu' => (int) 20, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 2, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 4, 'sci' => (int) 13, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 8, 'spa' => (int) 3, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 1, 'esa' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb436760' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ), 'gf_id' => 'HOM05D000680', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000680' ), 'data_identifier' => 'HOM05D000680', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ) $gf_id = 'HOM05D000680' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000680' ) $data_identifier = 'HOM05D000680' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 13, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 23, 'bra' => (int) 17, 'can' => (int) 31, 'cansat' => (int) 1, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 6, 'col' => (int) 33, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 16, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 32, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 41, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 69, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 4, 'lsa' => (int) 17, 'mes' => (int) 2, 'mpo' => (int) 1, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 28, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 21, 'nnu' => (int) 15, 'oeu' => (int) 20, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 2, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 4, 'sci' => (int) 13, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 8, 'spa' => (int) 3, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 1, 'esa' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb436760' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 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'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ), 'gf_id' => 'HOM05D000680', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000680' ), 'data_identifier' => 'HOM05D000680', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ) $gf_id = 'HOM05D000680' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000680' ) $data_identifier = 'HOM05D000680' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 13, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 23, 'bra' => (int) 17, 'can' => (int) 31, 'cansat' => (int) 1, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 6, 'col' => (int) 33, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 16, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 32, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 41, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 69, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 4, 'lsa' => (int) 17, 'mes' => (int) 2, 'mpo' => (int) 1, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 28, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 21, 'nnu' => (int) 15, 'oeu' => (int) 20, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 2, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 4, 'sci' => (int) 13, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 8, 'spa' => (int) 3, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 1, 'esa' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb436760' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ), 'gf_id' => 'HOM05D000680', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000680' ), 'data_identifier' => 'HOM05D000680', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ) $gf_id = 'HOM05D000680' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000680' ) $data_identifier = 'HOM05D000680' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 13, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 23, 'bra' => (int) 17, 'can' => (int) 31, 'cansat' => (int) 1, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 6, 'col' => (int) 33, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 16, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 32, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 41, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 69, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 4, 'lsa' => (int) 17, 'mes' => (int) 2, 'mpo' => (int) 1, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 28, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 21, 'nnu' => (int) 15, 'oeu' => (int) 20, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 2, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 4, 'sci' => (int) 13, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 8, 'spa' => (int) 3, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 1, 'esa' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb436760' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ), 'gf_id' => 'HOM05D000680', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000680' ), 'data_identifier' => 'HOM05D000680', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ) $gf_id = 'HOM05D000680' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000680' ) $data_identifier = 'HOM05D000680' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 13, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 23, 'bra' => (int) 17, 'can' => (int) 31, 'cansat' => (int) 1, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 6, 'col' => (int) 33, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 16, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 32, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 41, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 69, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 4, 'lsa' => (int) 17, 'mes' => (int) 2, 'mpo' => (int) 1, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 28, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 21, 'nnu' => (int) 15, 'oeu' => (int) 20, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 2, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 4, 'sci' => (int) 13, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 8, 'spa' => (int) 3, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 1, 'esa' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb436760' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ), 'gf_id' => 'HOM05D000680', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000680' ), 'data_identifier' => 'HOM05D000680', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ) $gf_id = 'HOM05D000680' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000680' ) $data_identifier = 'HOM05D000680' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 13, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 23, 'bra' => (int) 17, 'can' => (int) 31, 'cansat' => (int) 1, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 6, 'col' => (int) 33, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 16, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 32, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 41, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 69, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 4, 'lsa' => (int) 17, 'mes' => (int) 2, 'mpo' => (int) 1, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 28, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 21, 'nnu' => (int) 15, 'oeu' => (int) 20, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 2, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 4, 'sci' => (int) 13, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 8, 'spa' => (int) 3, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 1, 'esa' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb436760' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ), 'gf_id' => 'HOM05D000680', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000680' ), 'data_identifier' => 'HOM05D000680', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ) $gf_id = 'HOM05D000680' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000680' ) $data_identifier = 'HOM05D000680' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 13, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 23, 'bra' => (int) 17, 'can' => (int) 31, 'cansat' => (int) 1, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 6, 'col' => (int) 33, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 16, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 32, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 41, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 69, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 4, 'lsa' => (int) 17, 'mes' => (int) 2, 'mpo' => (int) 1, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 28, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 21, 'nnu' => (int) 15, 'oeu' => (int) 20, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 2, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 4, 'sci' => (int) 13, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 8, 'spa' => (int) 3, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 1, 'esa' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb436760' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ), 'gf_id' => 'HOM05D000680', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000680' ), 'data_identifier' => 'HOM05D000680', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ) $gf_id = 'HOM05D000680' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000680' ) $data_identifier = 'HOM05D000680' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 13, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 23, 'bra' => (int) 17, 'can' => (int) 31, 'cansat' => (int) 1, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 6, 'col' => (int) 33, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 16, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 32, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 41, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 69, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 4, 'lsa' => (int) 17, 'mes' => (int) 2, 'mpo' => (int) 1, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 28, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 21, 'nnu' => (int) 15, 'oeu' => (int) 20, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 2, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 4, 'sci' => (int) 13, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 8, 'spa' => (int) 3, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 1, 'esa' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb436760' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 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'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ), 'gf_id' => 'HOM05D000680', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000680' ), 'data_identifier' => 'HOM05D000680', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ) $gf_id = 'HOM05D000680' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000680' ) $data_identifier = 'HOM05D000680' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 13, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 23, 'bra' => (int) 17, 'can' => (int) 31, 'cansat' => (int) 1, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 6, 'col' => (int) 33, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 16, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 32, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 41, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 69, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 4, 'lsa' => (int) 17, 'mes' => (int) 2, 'mpo' => (int) 1, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 28, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 21, 'nnu' => (int) 15, 'oeu' => (int) 20, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 2, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 4, 'sci' => (int) 13, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 8, 'spa' => (int) 3, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 1, 'esa' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb436760' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ), 'gf_id' => 'HOM05D000680', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000680' ), 'data_identifier' => 'HOM05D000680', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ) $gf_id = 'HOM05D000680' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000680' ) $data_identifier = 'HOM05D000680' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 13, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 23, 'bra' => (int) 17, 'can' => (int) 31, 'cansat' => (int) 1, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 6, 'col' => (int) 33, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 16, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 32, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 41, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 69, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 4, 'lsa' => (int) 17, 'mes' => (int) 2, 'mpo' => (int) 1, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 28, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 21, 'nnu' => (int) 15, 'oeu' => (int) 20, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 2, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 4, 'sci' => (int) 13, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 8, 'spa' => (int) 3, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 1, 'esa' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb436760' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ), 'gf_id' => 'HOM05D000680', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000680' ), 'data_identifier' => 'HOM05D000680', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ) $gf_id = 'HOM05D000680' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000680' ) $data_identifier = 'HOM05D000680' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 13, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 23, 'bra' => (int) 17, 'can' => (int) 31, 'cansat' => (int) 1, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 6, 'col' => (int) 33, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 16, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 32, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 41, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 69, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 4, 'lsa' => (int) 17, 'mes' => (int) 2, 'mpo' => (int) 1, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 28, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 21, 'nnu' => (int) 15, 'oeu' => (int) 20, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 2, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 4, 'sci' => (int) 13, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 8, 'spa' => (int) 3, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 1, 'esa' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb436760' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ), 'gf_id' => 'HOM05D000680', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000680' ), 'data_identifier' => 'HOM05D000680', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ) $gf_id = 'HOM05D000680' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000680' ) $data_identifier = 'HOM05D000680' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 13, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 23, 'bra' => (int) 17, 'can' => (int) 31, 'cansat' => (int) 1, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 6, 'col' => (int) 33, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 16, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 32, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 41, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 69, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 4, 'lsa' => (int) 17, 'mes' => (int) 2, 'mpo' => (int) 1, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 28, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 21, 'nnu' => (int) 15, 'oeu' => (int) 20, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 2, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 4, 'sci' => (int) 13, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 8, 'spa' => (int) 3, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 1, 'esa' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb436760' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ), 'gf_id' => 'HOM05D000680', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000680' ), 'data_identifier' => 'HOM05D000680', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ) $gf_id = 'HOM05D000680' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000680' ) $data_identifier = 'HOM05D000680' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 13, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 23, 'bra' => (int) 17, 'can' => (int) 31, 'cansat' => (int) 1, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 6, 'col' => (int) 33, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 16, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 32, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 41, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 69, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 4, 'lsa' => (int) 17, 'mes' => (int) 2, 'mpo' => (int) 1, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 28, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 21, 'nnu' => (int) 15, 'oeu' => (int) 20, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 2, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 4, 'sci' => (int) 13, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 8, 'spa' => (int) 3, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 1, 'esa' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb436760' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ), 'gf_id' => 'HOM05D000680', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000680' ), 'data_identifier' => 'HOM05D000680', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ) $gf_id = 'HOM05D000680' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000680' ) $data_identifier = 'HOM05D000680' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 13, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 23, 'bra' => (int) 17, 'can' => (int) 31, 'cansat' => (int) 1, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 6, 'col' => (int) 33, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 16, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 32, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 41, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 69, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 4, 'lsa' => (int) 17, 'mes' => (int) 2, 'mpo' => (int) 1, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 28, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 21, 'nnu' => (int) 15, 'oeu' => (int) 20, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 2, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 4, 'sci' => (int) 13, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 8, 'spa' => (int) 3, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 1, 'esa' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb436760' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 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'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ), 'gf_id' => 'HOM05D000680', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000680' ), 'data_identifier' => 'HOM05D000680', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ) $gf_id = 'HOM05D000680' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000680' ) $data_identifier = 'HOM05D000680' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 13, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 23, 'bra' => (int) 17, 'can' => (int) 31, 'cansat' => (int) 1, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 6, 'col' => (int) 33, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 16, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 32, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 41, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 69, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 4, 'lsa' => (int) 17, 'mes' => (int) 2, 'mpo' => (int) 1, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 28, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 21, 'nnu' => (int) 15, 'oeu' => (int) 20, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 2, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 4, 'sci' => (int) 13, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 8, 'spa' => (int) 3, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 1, 'esa' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb436760' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ), 'gf_id' => 'HOM05D000680', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000680' ), 'data_identifier' => 'HOM05D000680', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ) $gf_id = 'HOM05D000680' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000680' ) $data_identifier = 'HOM05D000680' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 13, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 23, 'bra' => (int) 17, 'can' => (int) 31, 'cansat' => (int) 1, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 6, 'col' => (int) 33, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 16, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 32, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 41, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 69, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 4, 'lsa' => (int) 17, 'mes' => (int) 2, 'mpo' => (int) 1, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 28, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 21, 'nnu' => (int) 15, 'oeu' => (int) 20, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 2, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 4, 'sci' => (int) 13, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 8, 'spa' => (int) 3, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 1, 'esa' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb436760' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ), 'gf_id' => 'HOM05D000680', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000680' ), 'data_identifier' => 'HOM05D000680', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ) $gf_id = 'HOM05D000680' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000680' ) $data_identifier = 'HOM05D000680' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 13, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 23, 'bra' => (int) 17, 'can' => (int) 31, 'cansat' => (int) 1, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 6, 'col' => (int) 33, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 16, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 32, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 41, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 69, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 4, 'lsa' => (int) 17, 'mes' => (int) 2, 'mpo' => (int) 1, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 28, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 21, 'nnu' => (int) 15, 'oeu' => (int) 20, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 2, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 4, 'sci' => (int) 13, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 8, 'spa' => (int) 3, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 1, 'esa' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb436760' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ), 'gf_id' => 'HOM05D000680', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000680' ), 'data_identifier' => 'HOM05D000680', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ) $gf_id = 'HOM05D000680' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000680' ) $data_identifier = 'HOM05D000680' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 13, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 23, 'bra' => (int) 17, 'can' => (int) 31, 'cansat' => (int) 1, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 6, 'col' => (int) 33, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 16, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 32, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 41, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 69, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 4, 'lsa' => (int) 17, 'mes' => (int) 2, 'mpo' => (int) 1, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 28, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 21, 'nnu' => (int) 15, 'oeu' => (int) 20, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 2, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 4, 'sci' => (int) 13, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 8, 'spa' => (int) 3, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 1, 'esa' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb436760' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ), 'gf_id' => 'HOM05D000680', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000680' ), 'data_identifier' => 'HOM05D000680', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ) $gf_id = 'HOM05D000680' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000680' ) $data_identifier = 'HOM05D000680' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 13, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 23, 'bra' => (int) 17, 'can' => (int) 31, 'cansat' => (int) 1, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 6, 'col' => (int) 33, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 16, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 32, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 41, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 69, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 4, 'lsa' => (int) 17, 'mes' => (int) 2, 'mpo' => (int) 1, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 28, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 21, 'nnu' => (int) 15, 'oeu' => (int) 20, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 2, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 4, 'sci' => (int) 13, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 8, 'spa' => (int) 3, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 1, 'esa' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb436760' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ), 'gf_id' => 'HOM05D000680', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000680' ), 'data_identifier' => 'HOM05D000680', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ) $gf_id = 'HOM05D000680' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000680' ) $data_identifier = 'HOM05D000680' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 13, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 23, 'bra' => (int) 17, 'can' => (int) 31, 'cansat' => (int) 1, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 6, 'col' => (int) 33, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 16, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 32, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 41, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 69, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 4, 'lsa' => (int) 17, 'mes' => (int) 2, 'mpo' => (int) 1, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 28, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 21, 'nnu' => (int) 15, 'oeu' => (int) 20, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 2, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 4, 'sci' => (int) 13, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 8, 'spa' => (int) 3, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 1, 'esa' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb436760' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 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'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ), 'gf_id' => 'HOM05D000680', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000680' ), 'data_identifier' => 'HOM05D000680', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ) $gf_id = 'HOM05D000680' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000680' ) $data_identifier = 'HOM05D000680' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 13, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 23, 'bra' => (int) 17, 'can' => (int) 31, 'cansat' => (int) 1, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 6, 'col' => (int) 33, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 16, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 32, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 41, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 69, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 4, 'lsa' => (int) 17, 'mes' => (int) 2, 'mpo' => (int) 1, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 28, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 21, 'nnu' => (int) 15, 'oeu' => (int) 20, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 2, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 4, 'sci' => (int) 13, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 8, 'spa' => (int) 3, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 1, 'esa' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb436760' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ), 'gf_id' => 'HOM05D000680', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000680' ), 'data_identifier' => 'HOM05D000680', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ) $gf_id = 'HOM05D000680' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000680' ) $data_identifier = 'HOM05D000680' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 13, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 23, 'bra' => (int) 17, 'can' => (int) 31, 'cansat' => (int) 1, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 6, 'col' => (int) 33, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 16, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 32, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 41, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 69, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 4, 'lsa' => (int) 17, 'mes' => (int) 2, 'mpo' => (int) 1, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 28, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 21, 'nnu' => (int) 15, 'oeu' => (int) 20, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 2, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 4, 'sci' => (int) 13, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 8, 'spa' => (int) 3, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 1, 'esa' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb436760' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ), 'gf_id' => 'HOM05D000680', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000680' ), 'data_identifier' => 'HOM05D000680', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ) $gf_id = 'HOM05D000680' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000680' ) $data_identifier = 'HOM05D000680' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 13, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 23, 'bra' => (int) 17, 'can' => (int) 31, 'cansat' => (int) 1, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 6, 'col' => (int) 33, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 16, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 32, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 41, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 69, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 4, 'lsa' => (int) 17, 'mes' => (int) 2, 'mpo' => (int) 1, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 28, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 21, 'nnu' => (int) 15, 'oeu' => (int) 20, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 2, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 4, 'sci' => (int) 13, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 8, 'spa' => (int) 3, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 1, 'esa' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb436760' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ), 'gf_id' => 'HOM05D000680', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000680' ), 'data_identifier' => 'HOM05D000680', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ) $gf_id = 'HOM05D000680' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000680' ) $data_identifier = 'HOM05D000680' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 13, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 23, 'bra' => (int) 17, 'can' => (int) 31, 'cansat' => (int) 1, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 6, 'col' => (int) 33, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 16, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 32, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 41, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 69, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 4, 'lsa' => (int) 17, 'mes' => (int) 2, 'mpo' => (int) 1, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 28, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 21, 'nnu' => (int) 15, 'oeu' => (int) 20, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 2, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 4, 'sci' => (int) 13, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 8, 'spa' => (int) 3, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 1, 'esa' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb436760' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ), 'gf_id' => 'HOM05D000680', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000680' ), 'data_identifier' => 'HOM05D000680', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ) $gf_id = 'HOM05D000680' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000680' ) $data_identifier = 'HOM05D000680' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 13, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 23, 'bra' => (int) 17, 'can' => (int) 31, 'cansat' => (int) 1, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 6, 'col' => (int) 33, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 16, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 32, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 41, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 69, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 4, 'lsa' => (int) 17, 'mes' => (int) 2, 'mpo' => (int) 1, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 28, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 21, 'nnu' => (int) 15, 'oeu' => (int) 20, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 2, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 4, 'sci' => (int) 13, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 8, 'spa' => (int) 3, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 1, 'esa' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb436760' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ), 'gf_id' => 'HOM05D000680', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000680' ), 'data_identifier' => 'HOM05D000680', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ) $gf_id = 'HOM05D000680' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000680' ) $data_identifier = 'HOM05D000680' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 13, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 23, 'bra' => (int) 17, 'can' => (int) 31, 'cansat' => (int) 1, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 6, 'col' => (int) 33, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 16, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 32, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 41, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 69, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 4, 'lsa' => (int) 17, 'mes' => (int) 2, 'mpo' => (int) 1, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 28, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 21, 'nnu' => (int) 15, 'oeu' => (int) 20, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 2, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 4, 'sci' => (int) 13, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 8, 'spa' => (int) 3, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 1, 'esa' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb436760' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 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'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ), 'gf_id' => 'HOM05D000680', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000680' ), 'data_identifier' => 'HOM05D000680', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ) $gf_id = 'HOM05D000680' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000680' ) $data_identifier = 'HOM05D000680' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 13, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 23, 'bra' => (int) 17, 'can' => (int) 31, 'cansat' => (int) 1, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 6, 'col' => (int) 33, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 16, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 32, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 41, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 69, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 4, 'lsa' => (int) 17, 'mes' => (int) 2, 'mpo' => (int) 1, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 28, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 21, 'nnu' => (int) 15, 'oeu' => (int) 20, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 2, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 4, 'sci' => (int) 13, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 8, 'spa' => (int) 3, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 1, 'esa' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb436760' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ), 'gf_id' => 'HOM05D000680', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000680' ), 'data_identifier' => 'HOM05D000680', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ) $gf_id = 'HOM05D000680' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000680' ) $data_identifier = 'HOM05D000680' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 13, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 23, 'bra' => (int) 17, 'can' => (int) 31, 'cansat' => (int) 1, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 6, 'col' => (int) 33, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 16, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 32, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 41, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 69, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 4, 'lsa' => (int) 17, 'mes' => (int) 2, 'mpo' => (int) 1, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 28, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 21, 'nnu' => (int) 15, 'oeu' => (int) 20, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 2, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 4, 'sci' => (int) 13, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 8, 'spa' => (int) 3, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 1, 'esa' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb436760' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ), 'gf_id' => 'HOM05D000680', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000680' ), 'data_identifier' => 'HOM05D000680', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ) $gf_id = 'HOM05D000680' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000680' ) $data_identifier = 'HOM05D000680' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 13, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 23, 'bra' => (int) 17, 'can' => (int) 31, 'cansat' => (int) 1, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 6, 'col' => (int) 33, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 16, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 32, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 41, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 69, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 4, 'lsa' => (int) 17, 'mes' => (int) 2, 'mpo' => (int) 1, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 28, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 21, 'nnu' => (int) 15, 'oeu' => (int) 20, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 2, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 4, 'sci' => (int) 13, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 8, 'spa' => (int) 3, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 1, 'esa' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb436760' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ), 'gf_id' => 'HOM05D000680', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000680' ), 'data_identifier' => 'HOM05D000680', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ) $gf_id = 'HOM05D000680' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000680' ) $data_identifier = 'HOM05D000680' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 13, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 23, 'bra' => (int) 17, 'can' => (int) 31, 'cansat' => (int) 1, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 6, 'col' => (int) 33, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 16, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 32, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 41, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 69, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 4, 'lsa' => (int) 17, 'mes' => (int) 2, 'mpo' => (int) 1, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 28, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 21, 'nnu' => (int) 15, 'oeu' => (int) 20, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 2, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 4, 'sci' => (int) 13, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 8, 'spa' => (int) 3, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 1, 'esa' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb436760' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ), 'gf_id' => 'HOM05D000680', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000680' ), 'data_identifier' => 'HOM05D000680', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ) $gf_id = 'HOM05D000680' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000680' ) $data_identifier = 'HOM05D000680' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 13, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 23, 'bra' => (int) 17, 'can' => (int) 31, 'cansat' => (int) 1, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 6, 'col' => (int) 33, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 16, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 32, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 41, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 69, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 4, 'lsa' => (int) 17, 'mes' => (int) 2, 'mpo' => (int) 1, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 28, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 21, 'nnu' => (int) 15, 'oeu' => (int) 20, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 2, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 4, 'sci' => (int) 13, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 8, 'spa' => (int) 3, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 1, 'esa' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb436760' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ), 'gf_id' => 'HOM05D000680', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000680' ), 'data_identifier' => 'HOM05D000680', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ) $gf_id = 'HOM05D000680' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000680' ) $data_identifier = 'HOM05D000680' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 13, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 23, 'bra' => (int) 17, 'can' => (int) 31, 'cansat' => (int) 1, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 6, 'col' => (int) 33, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 16, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 32, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 41, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 69, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 4, 'lsa' => (int) 17, 'mes' => (int) 2, 'mpo' => (int) 1, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 28, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 21, 'nnu' => (int) 15, 'oeu' => (int) 20, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 2, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 4, 'sci' => (int) 13, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 8, 'spa' => (int) 3, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 1, 'esa' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb436760' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 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'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ), 'gf_id' => 'HOM05D000680', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000680' ), 'data_identifier' => 'HOM05D000680', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ) $gf_id = 'HOM05D000680' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000680' ) $data_identifier = 'HOM05D000680' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 13, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 23, 'bra' => (int) 17, 'can' => (int) 31, 'cansat' => (int) 1, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 6, 'col' => (int) 33, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 16, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 32, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 41, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 69, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 4, 'lsa' => (int) 17, 'mes' => (int) 2, 'mpo' => (int) 1, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 28, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 21, 'nnu' => (int) 15, 'oeu' => (int) 20, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 2, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 4, 'sci' => (int) 13, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 8, 'spa' => (int) 3, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 1, 'esa' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb436760' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ), 'gf_id' => 'HOM05D000680', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000680' ), 'data_identifier' => 'HOM05D000680', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ) $gf_id = 'HOM05D000680' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000680' ) $data_identifier = 'HOM05D000680' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 13, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 23, 'bra' => (int) 17, 'can' => (int) 31, 'cansat' => (int) 1, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 6, 'col' => (int) 33, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 16, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 32, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 41, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 69, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 4, 'lsa' => (int) 17, 'mes' => (int) 2, 'mpo' => (int) 1, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 28, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 21, 'nnu' => (int) 15, 'oeu' => (int) 20, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 2, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 4, 'sci' => (int) 13, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 8, 'spa' => (int) 3, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 1, 'esa' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb436760' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ), 'gf_id' => 'HOM05D000680', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000680' ), 'data_identifier' => 'HOM05D000680', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ) $gf_id = 'HOM05D000680' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000680' ) $data_identifier = 'HOM05D000680' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 13, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 23, 'bra' => (int) 17, 'can' => (int) 31, 'cansat' => (int) 1, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 6, 'col' => (int) 33, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 16, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 32, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 41, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 69, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 4, 'lsa' => (int) 17, 'mes' => (int) 2, 'mpo' => (int) 1, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 28, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 21, 'nnu' => (int) 15, 'oeu' => (int) 20, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 2, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 4, 'sci' => (int) 13, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 8, 'spa' => (int) 3, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 1, 'esa' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb436760' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ), 'gf_id' => 'HOM05D000680', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000680' ), 'data_identifier' => 'HOM05D000680', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ) $gf_id = 'HOM05D000680' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000680' ) $data_identifier = 'HOM05D000680' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 13, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 23, 'bra' => (int) 17, 'can' => (int) 31, 'cansat' => (int) 1, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 6, 'col' => (int) 33, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 16, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 32, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 41, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 69, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 4, 'lsa' => (int) 17, 'mes' => (int) 2, 'mpo' => (int) 1, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 28, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 21, 'nnu' => (int) 15, 'oeu' => (int) 20, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 2, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 4, 'sci' => (int) 13, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 8, 'spa' => (int) 3, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 1, 'esa' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb436760' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ), 'gf_id' => 'HOM05D000680', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000680' ), 'data_identifier' => 'HOM05D000680', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ) $gf_id = 'HOM05D000680' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000680' ) $data_identifier = 'HOM05D000680' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 13, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 23, 'bra' => (int) 17, 'can' => (int) 31, 'cansat' => (int) 1, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 6, 'col' => (int) 33, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 16, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 32, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 41, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 69, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 4, 'lsa' => (int) 17, 'mes' => (int) 2, 'mpo' => (int) 1, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 28, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 21, 'nnu' => (int) 15, 'oeu' => (int) 20, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 2, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 4, 'sci' => (int) 13, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 8, 'spa' => (int) 3, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 1, 'esa' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb436760' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ), 'gf_id' => 'HOM05D000680', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000680' ), 'data_identifier' => 'HOM05D000680', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ) $gf_id = 'HOM05D000680' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000680' ) $data_identifier = 'HOM05D000680' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 13, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 23, 'bra' => (int) 17, 'can' => (int) 31, 'cansat' => (int) 1, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 6, 'col' => (int) 33, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 16, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 32, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 41, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 69, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 4, 'lsa' => (int) 17, 'mes' => (int) 2, 'mpo' => (int) 1, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 28, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 21, 'nnu' => (int) 15, 'oeu' => (int) 20, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 2, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 4, 'sci' => (int) 13, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 8, 'spa' => (int) 3, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 1, 'esa' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb436760' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 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'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ), 'gf_id' => 'HOM05D000680', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000680' ), 'data_identifier' => 'HOM05D000680', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ) $gf_id = 'HOM05D000680' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000680' ) $data_identifier = 'HOM05D000680' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 13, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 23, 'bra' => (int) 17, 'can' => (int) 31, 'cansat' => (int) 1, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 6, 'col' => (int) 33, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 16, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 32, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 41, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 69, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 4, 'lsa' => (int) 17, 'mes' => (int) 2, 'mpo' => (int) 1, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 28, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 21, 'nnu' => (int) 15, 'oeu' => (int) 20, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 2, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 4, 'sci' => (int) 13, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 8, 'spa' => (int) 3, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 1, 'esa' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb436760' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ), 'gf_id' => 'HOM05D000680', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000680' ), 'data_identifier' => 'HOM05D000680', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ) $gf_id = 'HOM05D000680' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000680' ) $data_identifier = 'HOM05D000680' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 13, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 23, 'bra' => (int) 17, 'can' => (int) 31, 'cansat' => (int) 1, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 6, 'col' => (int) 33, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 16, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 32, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 41, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 69, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 4, 'lsa' => (int) 17, 'mes' => (int) 2, 'mpo' => (int) 1, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 28, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 21, 'nnu' => (int) 15, 'oeu' => (int) 20, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 2, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 4, 'sci' => (int) 13, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 8, 'spa' => (int) 3, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 1, 'esa' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb436760' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ), 'gf_id' => 'HOM05D000680', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000680' ), 'data_identifier' => 'HOM05D000680', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ) $gf_id = 'HOM05D000680' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000680' ) $data_identifier = 'HOM05D000680' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 13, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 23, 'bra' => (int) 17, 'can' => (int) 31, 'cansat' => (int) 1, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 6, 'col' => (int) 33, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 16, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 32, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 41, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 69, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 4, 'lsa' => (int) 17, 'mes' => (int) 2, 'mpo' => (int) 1, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 28, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 21, 'nnu' => (int) 15, 'oeu' => (int) 20, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 2, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 4, 'sci' => (int) 13, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 8, 'spa' => (int) 3, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 1, 'esa' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb436760' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ), 'gf_id' => 'HOM05D000680', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000680' ), 'data_identifier' => 'HOM05D000680', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ) $gf_id = 'HOM05D000680' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000680' ) $data_identifier = 'HOM05D000680' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 13, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 23, 'bra' => (int) 17, 'can' => (int) 31, 'cansat' => (int) 1, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 6, 'col' => (int) 33, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 16, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 32, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 41, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 69, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 4, 'lsa' => (int) 17, 'mes' => (int) 2, 'mpo' => (int) 1, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 28, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 21, 'nnu' => (int) 15, 'oeu' => (int) 20, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 2, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 4, 'sci' => (int) 13, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 8, 'spa' => (int) 3, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 1, 'esa' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb436760' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ), 'gf_id' => 'HOM05D000680', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000680' ), 'data_identifier' => 'HOM05D000680', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ) $gf_id = 'HOM05D000680' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000680' ) $data_identifier = 'HOM05D000680' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 13, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 23, 'bra' => (int) 17, 'can' => (int) 31, 'cansat' => (int) 1, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 6, 'col' => (int) 33, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 16, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 32, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 41, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 69, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 4, 'lsa' => (int) 17, 'mes' => (int) 2, 'mpo' => (int) 1, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 28, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 21, 'nnu' => (int) 15, 'oeu' => (int) 20, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 2, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 4, 'sci' => (int) 13, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 8, 'spa' => (int) 3, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 1, 'esa' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb436760' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ), 'gf_id' => 'HOM05D000680', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000680' ), 'data_identifier' => 'HOM05D000680', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ) $gf_id = 'HOM05D000680' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000680' ) $data_identifier = 'HOM05D000680' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 13, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 23, 'bra' => (int) 17, 'can' => (int) 31, 'cansat' => (int) 1, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 6, 'col' => (int) 33, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 16, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 32, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 41, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 69, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 4, 'lsa' => (int) 17, 'mes' => (int) 2, 'mpo' => (int) 1, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 28, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 21, 'nnu' => (int) 15, 'oeu' => (int) 20, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 2, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 4, 'sci' => (int) 13, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 8, 'spa' => (int) 3, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 1, 'esa' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb436760' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 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'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ), 'gf_id' => 'HOM05D000680', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000680' ), 'data_identifier' => 'HOM05D000680', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ) $gf_id = 'HOM05D000680' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000680' ) $data_identifier = 'HOM05D000680' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 13, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 23, 'bra' => (int) 17, 'can' => (int) 31, 'cansat' => (int) 1, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 6, 'col' => (int) 33, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 16, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 32, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 41, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 69, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 4, 'lsa' => (int) 17, 'mes' => (int) 2, 'mpo' => (int) 1, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 28, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 21, 'nnu' => (int) 15, 'oeu' => (int) 20, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 2, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 4, 'sci' => (int) 13, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 8, 'spa' => (int) 3, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 1, 'esa' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb436760' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ), 'gf_id' => 'HOM05D000680', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000680' ), 'data_identifier' => 'HOM05D000680', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ) $gf_id = 'HOM05D000680' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000680' ) $data_identifier = 'HOM05D000680' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 13, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 23, 'bra' => (int) 17, 'can' => (int) 31, 'cansat' => (int) 1, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 6, 'col' => (int) 33, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 16, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 32, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 41, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 69, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 4, 'lsa' => (int) 17, 'mes' => (int) 2, 'mpo' => (int) 1, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 28, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 21, 'nnu' => (int) 15, 'oeu' => (int) 20, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 2, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 4, 'sci' => (int) 13, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 8, 'spa' => (int) 3, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 1, 'esa' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb436760' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ), 'gf_id' => 'HOM05D000680', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000680' ), 'data_identifier' => 'HOM05D000680', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ) $gf_id = 'HOM05D000680' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000680' ) $data_identifier = 'HOM05D000680' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 13, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 23, 'bra' => (int) 17, 'can' => (int) 31, 'cansat' => (int) 1, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 6, 'col' => (int) 33, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 16, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 32, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 41, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 69, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 4, 'lsa' => (int) 17, 'mes' => (int) 2, 'mpo' => (int) 1, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 28, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 21, 'nnu' => (int) 15, 'oeu' => (int) 20, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 2, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 4, 'sci' => (int) 13, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 8, 'spa' => (int) 3, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 1, 'esa' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb436760' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ), 'gf_id' => 'HOM05D000680', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000680' ), 'data_identifier' => 'HOM05D000680', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ) $gf_id = 'HOM05D000680' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000680' ) $data_identifier = 'HOM05D000680' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 13, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 23, 'bra' => (int) 17, 'can' => (int) 31, 'cansat' => (int) 1, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 6, 'col' => (int) 33, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 16, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 32, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 41, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 69, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 4, 'lsa' => (int) 17, 'mes' => (int) 2, 'mpo' => (int) 1, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 28, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 21, 'nnu' => (int) 15, 'oeu' => (int) 20, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 2, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 4, 'sci' => (int) 13, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 8, 'spa' => (int) 3, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 1, 'esa' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb436760' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ), 'gf_id' => 'HOM05D000680', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000680' ), 'data_identifier' => 'HOM05D000680', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ) $gf_id = 'HOM05D000680' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000680' ) $data_identifier = 'HOM05D000680' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 13, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 23, 'bra' => (int) 17, 'can' => (int) 31, 'cansat' => (int) 1, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 6, 'col' => (int) 33, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 16, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 32, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 41, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 69, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 4, 'lsa' => (int) 17, 'mes' => (int) 2, 'mpo' => (int) 1, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 28, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 21, 'nnu' => (int) 15, 'oeu' => (int) 20, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 2, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 4, 'sci' => (int) 13, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 8, 'spa' => (int) 3, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 1, 'esa' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb436760' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ), 'gf_id' => 'HOM05D000680', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000680' ), 'data_identifier' => 'HOM05D000680', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ) $gf_id = 'HOM05D000680' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000680' ) $data_identifier = 'HOM05D000680' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 13, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 23, 'bra' => (int) 17, 'can' => (int) 31, 'cansat' => (int) 1, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 6, 'col' => (int) 33, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 16, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 32, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 41, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 69, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 4, 'lsa' => (int) 17, 'mes' => (int) 2, 'mpo' => (int) 1, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 28, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 21, 'nnu' => (int) 15, 'oeu' => (int) 20, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 2, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 4, 'sci' => (int) 13, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 8, 'spa' => (int) 3, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 1, 'esa' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb436760' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 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'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ), 'gf_id' => 'HOM05D000680', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000680' ), 'data_identifier' => 'HOM05D000680', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ) $gf_id = 'HOM05D000680' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000680' ) $data_identifier = 'HOM05D000680' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 13, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 23, 'bra' => (int) 17, 'can' => (int) 31, 'cansat' => (int) 1, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 6, 'col' => (int) 33, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 16, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 32, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 41, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 69, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 4, 'lsa' => (int) 17, 'mes' => (int) 2, 'mpo' => (int) 1, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 28, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 21, 'nnu' => (int) 15, 'oeu' => (int) 20, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 2, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 4, 'sci' => (int) 13, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 8, 'spa' => (int) 3, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 1, 'esa' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb436760' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ), 'gf_id' => 'HOM05D000680', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000680' ), 'data_identifier' => 'HOM05D000680', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ) $gf_id = 'HOM05D000680' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000680' ) $data_identifier = 'HOM05D000680' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 13, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 23, 'bra' => (int) 17, 'can' => (int) 31, 'cansat' => (int) 1, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 6, 'col' => (int) 33, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 16, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 32, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 41, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 69, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 4, 'lsa' => (int) 17, 'mes' => (int) 2, 'mpo' => (int) 1, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 28, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 21, 'nnu' => (int) 15, 'oeu' => (int) 20, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 2, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 4, 'sci' => (int) 13, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 8, 'spa' => (int) 3, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 1, 'esa' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb436760' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ), 'gf_id' => 'HOM05D000680', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000680' ), 'data_identifier' => 'HOM05D000680', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ) $gf_id = 'HOM05D000680' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000680' ) $data_identifier = 'HOM05D000680' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 13, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 23, 'bra' => (int) 17, 'can' => (int) 31, 'cansat' => (int) 1, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 6, 'col' => (int) 33, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 16, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 32, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 41, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 69, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 4, 'lsa' => (int) 17, 'mes' => (int) 2, 'mpo' => (int) 1, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 28, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 21, 'nnu' => (int) 15, 'oeu' => (int) 20, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 2, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 4, 'sci' => (int) 13, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 8, 'spa' => (int) 3, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 1, 'esa' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb436760' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ), 'gf_id' => 'HOM05D000680', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000680' ), 'data_identifier' => 'HOM05D000680', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ) $gf_id = 'HOM05D000680' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000680' ) $data_identifier = 'HOM05D000680' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 13, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 23, 'bra' => (int) 17, 'can' => (int) 31, 'cansat' => (int) 1, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 6, 'col' => (int) 33, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 16, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 32, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 41, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 69, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 4, 'lsa' => (int) 17, 'mes' => (int) 2, 'mpo' => (int) 1, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 28, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 21, 'nnu' => (int) 15, 'oeu' => (int) 20, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 2, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 4, 'sci' => (int) 13, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 8, 'spa' => (int) 3, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 1, 'esa' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb436760' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ), 'gf_id' => 'HOM05D000680', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000680' ), 'data_identifier' => 'HOM05D000680', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ) $gf_id = 'HOM05D000680' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000680' ) $data_identifier = 'HOM05D000680' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 13, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 23, 'bra' => (int) 17, 'can' => (int) 31, 'cansat' => (int) 1, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 6, 'col' => (int) 33, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 16, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 32, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 41, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 69, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 4, 'lsa' => (int) 17, 'mes' => (int) 2, 'mpo' => (int) 1, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 28, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 21, 'nnu' => (int) 15, 'oeu' => (int) 20, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 2, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 4, 'sci' => (int) 13, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 8, 'spa' => (int) 3, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 1, 'esa' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb436760' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ), 'gf_id' => 'HOM05D000680', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000680' ), 'data_identifier' => 'HOM05D000680', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ) $gf_id = 'HOM05D000680' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000680' ) $data_identifier = 'HOM05D000680' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 13, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 23, 'bra' => (int) 17, 'can' => (int) 31, 'cansat' => (int) 1, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 6, 'col' => (int) 33, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 16, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 32, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 41, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 69, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 4, 'lsa' => (int) 17, 'mes' => (int) 2, 'mpo' => (int) 1, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 28, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 21, 'nnu' => (int) 15, 'oeu' => (int) 20, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 2, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 4, 'sci' => (int) 13, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 8, 'spa' => (int) 3, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 1, 'esa' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb436760' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 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'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ), 'gf_id' => 'HOM05D000680', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000680' ), 'data_identifier' => 'HOM05D000680', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ) $gf_id = 'HOM05D000680' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000680' ) $data_identifier = 'HOM05D000680' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 13, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 23, 'bra' => (int) 17, 'can' => (int) 31, 'cansat' => (int) 1, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 6, 'col' => (int) 33, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 16, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 32, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 41, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 69, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 4, 'lsa' => (int) 17, 'mes' => (int) 2, 'mpo' => (int) 1, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 28, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 21, 'nnu' => (int) 15, 'oeu' => (int) 20, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 2, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 4, 'sci' => (int) 13, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 8, 'spa' => (int) 3, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 1, 'esa' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb436760' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ), 'gf_id' => 'HOM05D000680', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000680' ), 'data_identifier' => 'HOM05D000680', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ) $gf_id = 'HOM05D000680' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000680' ) $data_identifier = 'HOM05D000680' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 13, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 23, 'bra' => (int) 17, 'can' => (int) 31, 'cansat' => (int) 1, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 6, 'col' => (int) 33, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 16, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 32, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 41, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 69, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 4, 'lsa' => (int) 17, 'mes' => (int) 2, 'mpo' => (int) 1, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 28, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 21, 'nnu' => (int) 15, 'oeu' => (int) 20, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 2, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 4, 'sci' => (int) 13, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 8, 'spa' => (int) 3, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 1, 'esa' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb436760' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ), 'gf_id' => 'HOM05D000680', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000680' ), 'data_identifier' => 'HOM05D000680', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ) $gf_id = 'HOM05D000680' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000680' ) $data_identifier = 'HOM05D000680' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 13, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 23, 'bra' => (int) 17, 'can' => (int) 31, 'cansat' => (int) 1, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 6, 'col' => (int) 33, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 16, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 32, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 41, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 69, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 4, 'lsa' => (int) 17, 'mes' => (int) 2, 'mpo' => (int) 1, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 28, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 21, 'nnu' => (int) 15, 'oeu' => (int) 20, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 2, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 4, 'sci' => (int) 13, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 8, 'spa' => (int) 3, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 1, 'esa' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb436760' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ), 'gf_id' => 'HOM05D000680', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000680' ), 'data_identifier' => 'HOM05D000680', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ) $gf_id = 'HOM05D000680' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000680' ) $data_identifier = 'HOM05D000680' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 13, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 23, 'bra' => (int) 17, 'can' => (int) 31, 'cansat' => (int) 1, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 6, 'col' => (int) 33, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 16, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 32, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 41, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 69, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 4, 'lsa' => (int) 17, 'mes' => (int) 2, 'mpo' => (int) 1, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 28, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 21, 'nnu' => (int) 15, 'oeu' => (int) 20, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 2, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 4, 'sci' => (int) 13, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 8, 'spa' => (int) 3, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 1, 'esa' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb436760' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ), 'gf_id' => 'HOM05D000680', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000680' ), 'data_identifier' => 'HOM05D000680', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ) $gf_id = 'HOM05D000680' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000680' ) $data_identifier = 'HOM05D000680' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 13, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 23, 'bra' => (int) 17, 'can' => (int) 31, 'cansat' => (int) 1, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 6, 'col' => (int) 33, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 16, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 32, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 41, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 69, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 4, 'lsa' => (int) 17, 'mes' => (int) 2, 'mpo' => (int) 1, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 28, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 21, 'nnu' => (int) 15, 'oeu' => (int) 20, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 2, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 4, 'sci' => (int) 13, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 8, 'spa' => (int) 3, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 1, 'esa' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb436760' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ), 'gf_id' => 'HOM05D000680', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000680' ), 'data_identifier' => 'HOM05D000680', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ) $gf_id = 'HOM05D000680' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000680' ) $data_identifier = 'HOM05D000680' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 13, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 23, 'bra' => (int) 17, 'can' => (int) 31, 'cansat' => (int) 1, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 6, 'col' => (int) 33, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 16, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 32, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 41, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 69, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 4, 'lsa' => (int) 17, 'mes' => (int) 2, 'mpo' => (int) 1, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 28, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 21, 'nnu' => (int) 15, 'oeu' => (int) 20, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 2, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 4, 'sci' => (int) 13, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 8, 'spa' => (int) 3, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 1, 'esa' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb436760' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 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'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ), 'gf_id' => 'HOM05D000680', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000680' ), 'data_identifier' => 'HOM05D000680', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ) $gf_id = 'HOM05D000680' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000680' ) $data_identifier = 'HOM05D000680' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 13, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 23, 'bra' => (int) 17, 'can' => (int) 31, 'cansat' => (int) 1, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 6, 'col' => (int) 33, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 16, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 32, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 41, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 69, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 4, 'lsa' => (int) 17, 'mes' => (int) 2, 'mpo' => (int) 1, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 28, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 21, 'nnu' => (int) 15, 'oeu' => (int) 20, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 2, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 4, 'sci' => (int) 13, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 8, 'spa' => (int) 3, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 1, 'esa' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb436760' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ), 'gf_id' => 'HOM05D000680', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000680' ), 'data_identifier' => 'HOM05D000680', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ) $gf_id = 'HOM05D000680' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000680' ) $data_identifier = 'HOM05D000680' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 13, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 23, 'bra' => (int) 17, 'can' => (int) 31, 'cansat' => (int) 1, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 6, 'col' => (int) 33, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 16, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 32, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 41, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 69, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 4, 'lsa' => (int) 17, 'mes' => (int) 2, 'mpo' => (int) 1, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 28, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 21, 'nnu' => (int) 15, 'oeu' => (int) 20, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 2, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 4, 'sci' => (int) 13, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 8, 'spa' => (int) 3, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 1, 'esa' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb436760' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ), 'gf_id' => 'HOM05D000680', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000680' ), 'data_identifier' => 'HOM05D000680', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ) $gf_id = 'HOM05D000680' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000680' ) $data_identifier = 'HOM05D000680' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 13, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 23, 'bra' => (int) 17, 'can' => (int) 31, 'cansat' => (int) 1, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 6, 'col' => (int) 33, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 16, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 32, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 41, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 69, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 4, 'lsa' => (int) 17, 'mes' => (int) 2, 'mpo' => (int) 1, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 28, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 21, 'nnu' => (int) 15, 'oeu' => (int) 20, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 2, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 4, 'sci' => (int) 13, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 8, 'spa' => (int) 3, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 1, 'esa' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb436760' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ), 'gf_id' => 'HOM05D000680', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000680' ), 'data_identifier' => 'HOM05D000680', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ) $gf_id = 'HOM05D000680' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000680' ) $data_identifier = 'HOM05D000680' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 13, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 23, 'bra' => (int) 17, 'can' => (int) 31, 'cansat' => (int) 1, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 6, 'col' => (int) 33, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 16, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 32, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 41, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 69, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 4, 'lsa' => (int) 17, 'mes' => (int) 2, 'mpo' => (int) 1, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 28, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 21, 'nnu' => (int) 15, 'oeu' => (int) 20, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 2, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 4, 'sci' => (int) 13, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 8, 'spa' => (int) 3, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 1, 'esa' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb436760' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ), 'gf_id' => 'HOM05D000680', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000680' ), 'data_identifier' => 'HOM05D000680', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ) $gf_id = 'HOM05D000680' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000680' ) $data_identifier = 'HOM05D000680' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 13, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 23, 'bra' => (int) 17, 'can' => (int) 31, 'cansat' => (int) 1, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 6, 'col' => (int) 33, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 16, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 32, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 41, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 69, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 4, 'lsa' => (int) 17, 'mes' => (int) 2, 'mpo' => (int) 1, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 28, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 21, 'nnu' => (int) 15, 'oeu' => (int) 20, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 2, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 4, 'sci' => (int) 13, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 8, 'spa' => (int) 3, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 1, 'esa' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb436760' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ), 'gf_id' => 'HOM05D000680', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000680' ), 'data_identifier' => 'HOM05D000680', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ) $gf_id = 'HOM05D000680' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000680' ) $data_identifier = 'HOM05D000680' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 13, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 23, 'bra' => (int) 17, 'can' => (int) 31, 'cansat' => (int) 1, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 6, 'col' => (int) 33, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 16, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 32, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 41, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 69, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 4, 'lsa' => (int) 17, 'mes' => (int) 2, 'mpo' => (int) 1, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 28, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 21, 'nnu' => (int) 15, 'oeu' => (int) 20, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 2, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 4, 'sci' => (int) 13, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 8, 'spa' => (int) 3, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 1, 'esa' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb436760' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 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'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ), 'gf_id' => 'HOM05D000680', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000680' ), 'data_identifier' => 'HOM05D000680', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ) $gf_id = 'HOM05D000680' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000680' ) $data_identifier = 'HOM05D000680' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 13, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 23, 'bra' => (int) 17, 'can' => (int) 31, 'cansat' => (int) 1, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 6, 'col' => (int) 33, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 16, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 32, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 41, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 69, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 4, 'lsa' => (int) 17, 'mes' => (int) 2, 'mpo' => (int) 1, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 28, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 21, 'nnu' => (int) 15, 'oeu' => (int) 20, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 2, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 4, 'sci' => (int) 13, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 8, 'spa' => (int) 3, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 1, 'esa' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb436760' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ), 'gf_id' => 'HOM05D000680', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000680' ), 'data_identifier' => 'HOM05D000680', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ) $gf_id = 'HOM05D000680' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000680' ) $data_identifier = 'HOM05D000680' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 13, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 23, 'bra' => (int) 17, 'can' => (int) 31, 'cansat' => (int) 1, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 6, 'col' => (int) 33, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 16, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 32, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 41, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 69, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 4, 'lsa' => (int) 17, 'mes' => (int) 2, 'mpo' => (int) 1, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 28, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 21, 'nnu' => (int) 15, 'oeu' => (int) 20, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 2, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 4, 'sci' => (int) 13, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 8, 'spa' => (int) 3, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 1, 'esa' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb436760' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ), 'gf_id' => 'HOM05D000680', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000680' ), 'data_identifier' => 'HOM05D000680', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ) $gf_id = 'HOM05D000680' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000680' ) $data_identifier = 'HOM05D000680' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 13, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 23, 'bra' => (int) 17, 'can' => (int) 31, 'cansat' => (int) 1, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 6, 'col' => (int) 33, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 16, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 32, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 41, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 69, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 4, 'lsa' => (int) 17, 'mes' => (int) 2, 'mpo' => (int) 1, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 28, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 21, 'nnu' => (int) 15, 'oeu' => (int) 20, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 2, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 4, 'sci' => (int) 13, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 8, 'spa' => (int) 3, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 1, 'esa' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb436760' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ), 'gf_id' => 'HOM05D000680', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000680' ), 'data_identifier' => 'HOM05D000680', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ) $gf_id = 'HOM05D000680' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000680' ) $data_identifier = 'HOM05D000680' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 13, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 23, 'bra' => (int) 17, 'can' => (int) 31, 'cansat' => (int) 1, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 6, 'col' => (int) 33, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 16, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 32, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 41, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 69, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 4, 'lsa' => (int) 17, 'mes' => (int) 2, 'mpo' => (int) 1, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 28, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 21, 'nnu' => (int) 15, 'oeu' => (int) 20, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 2, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 4, 'sci' => (int) 13, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 8, 'spa' => (int) 3, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 1, 'esa' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb436760' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ), 'gf_id' => 'HOM05D000680', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000680' ), 'data_identifier' => 'HOM05D000680', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ) $gf_id = 'HOM05D000680' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000680' ) $data_identifier = 'HOM05D000680' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 13, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 23, 'bra' => (int) 17, 'can' => (int) 31, 'cansat' => (int) 1, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 6, 'col' => (int) 33, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 16, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 32, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 41, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 69, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 4, 'lsa' => (int) 17, 'mes' => (int) 2, 'mpo' => (int) 1, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 28, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 21, 'nnu' => (int) 15, 'oeu' => (int) 20, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 2, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 4, 'sci' => (int) 13, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 8, 'spa' => (int) 3, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 1, 'esa' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb436760' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ), 'gf_id' => 'HOM05D000680', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000680' ), 'data_identifier' => 'HOM05D000680', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ) $gf_id = 'HOM05D000680' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000680' ) $data_identifier = 'HOM05D000680' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 13, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 23, 'bra' => (int) 17, 'can' => (int) 31, 'cansat' => (int) 1, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 6, 'col' => (int) 33, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 16, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 32, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 41, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 69, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 4, 'lsa' => (int) 17, 'mes' => (int) 2, 'mpo' => (int) 1, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 28, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 21, 'nnu' => (int) 15, 'oeu' => (int) 20, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 2, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 4, 'sci' => (int) 13, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 8, 'spa' => (int) 3, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 1, 'esa' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb436760' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 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'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ), 'gf_id' => 'HOM05D000680', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000680' ), 'data_identifier' => 'HOM05D000680', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ) $gf_id = 'HOM05D000680' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000680' ) $data_identifier = 'HOM05D000680' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 13, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 23, 'bra' => (int) 17, 'can' => (int) 31, 'cansat' => (int) 1, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 6, 'col' => (int) 33, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 16, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 32, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 41, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 69, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 4, 'lsa' => (int) 17, 'mes' => (int) 2, 'mpo' => (int) 1, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 28, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 21, 'nnu' => (int) 15, 'oeu' => (int) 20, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 2, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 4, 'sci' => (int) 13, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 8, 'spa' => (int) 3, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 1, 'esa' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb436760' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ), 'gf_id' => 'HOM05D000680', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000680' ), 'data_identifier' => 'HOM05D000680', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ) $gf_id = 'HOM05D000680' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000680' ) $data_identifier = 'HOM05D000680' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 13, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 23, 'bra' => (int) 17, 'can' => (int) 31, 'cansat' => (int) 1, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 6, 'col' => (int) 33, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 16, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 32, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 41, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 69, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 4, 'lsa' => (int) 17, 'mes' => (int) 2, 'mpo' => (int) 1, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 28, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 21, 'nnu' => (int) 15, 'oeu' => (int) 20, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 2, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 4, 'sci' => (int) 13, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 8, 'spa' => (int) 3, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 1, 'esa' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb436760' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ), 'gf_id' => 'HOM05D000680', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000680' ), 'data_identifier' => 'HOM05D000680', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ) $gf_id = 'HOM05D000680' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000680' ) $data_identifier = 'HOM05D000680' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 13, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 23, 'bra' => (int) 17, 'can' => (int) 31, 'cansat' => (int) 1, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 6, 'col' => (int) 33, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 16, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 32, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 41, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 69, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 4, 'lsa' => (int) 17, 'mes' => (int) 2, 'mpo' => (int) 1, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 28, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 21, 'nnu' => (int) 15, 'oeu' => (int) 20, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 2, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 4, 'sci' => (int) 13, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 8, 'spa' => (int) 3, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 1, 'esa' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb436760' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ), 'gf_id' => 'HOM05D000680', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000680' ), 'data_identifier' => 'HOM05D000680', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ) $gf_id = 'HOM05D000680' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000680' ) $data_identifier = 'HOM05D000680' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 13, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 23, 'bra' => (int) 17, 'can' => (int) 31, 'cansat' => (int) 1, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 6, 'col' => (int) 33, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 16, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 32, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 41, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 69, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 4, 'lsa' => (int) 17, 'mes' => (int) 2, 'mpo' => (int) 1, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 28, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 21, 'nnu' => (int) 15, 'oeu' => (int) 20, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 2, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 4, 'sci' => (int) 13, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 8, 'spa' => (int) 3, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 1, 'esa' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb436760' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ), 'gf_id' => 'HOM05D000680', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000680' ), 'data_identifier' => 'HOM05D000680', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ) $gf_id = 'HOM05D000680' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000680' ) $data_identifier = 'HOM05D000680' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 13, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 23, 'bra' => (int) 17, 'can' => (int) 31, 'cansat' => (int) 1, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 6, 'col' => (int) 33, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 16, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 32, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 41, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 69, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 4, 'lsa' => (int) 17, 'mes' => (int) 2, 'mpo' => (int) 1, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 28, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 21, 'nnu' => (int) 15, 'oeu' => (int) 20, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 2, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 4, 'sci' => (int) 13, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 8, 'spa' => (int) 3, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 1, 'esa' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb436760' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ), 'gf_id' => 'HOM05D000680', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000680' ), 'data_identifier' => 'HOM05D000680', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ) $gf_id = 'HOM05D000680' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000680' ) $data_identifier = 'HOM05D000680' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 13, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 23, 'bra' => (int) 17, 'can' => (int) 31, 'cansat' => (int) 1, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 6, 'col' => (int) 33, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 16, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 32, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 41, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 69, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 4, 'lsa' => (int) 17, 'mes' => (int) 2, 'mpo' => (int) 1, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 28, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 21, 'nnu' => (int) 15, 'oeu' => (int) 20, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 2, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 4, 'sci' => (int) 13, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 8, 'spa' => (int) 3, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 1, 'esa' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb436760' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 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'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ), 'gf_id' => 'HOM05D000680', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000680' ), 'data_identifier' => 'HOM05D000680', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ) $gf_id = 'HOM05D000680' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000680' ) $data_identifier = 'HOM05D000680' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 13, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 23, 'bra' => (int) 17, 'can' => (int) 31, 'cansat' => (int) 1, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 6, 'col' => (int) 33, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 16, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 32, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 41, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 69, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 4, 'lsa' => (int) 17, 'mes' => (int) 2, 'mpo' => (int) 1, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 28, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 21, 'nnu' => (int) 15, 'oeu' => (int) 20, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 2, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 4, 'sci' => (int) 13, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 8, 'spa' => (int) 3, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 1, 'esa' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb436760' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ), 'gf_id' => 'HOM05D000680', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000680' ), 'data_identifier' => 'HOM05D000680', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ) $gf_id = 'HOM05D000680' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000680' ) $data_identifier = 'HOM05D000680' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 13, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 23, 'bra' => (int) 17, 'can' => (int) 31, 'cansat' => (int) 1, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 6, 'col' => (int) 33, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 16, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 32, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 41, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 69, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 4, 'lsa' => (int) 17, 'mes' => (int) 2, 'mpo' => (int) 1, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 28, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 21, 'nnu' => (int) 15, 'oeu' => (int) 20, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 2, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 4, 'sci' => (int) 13, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 8, 'spa' => (int) 3, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 1, 'esa' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb436760' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ), 'gf_id' => 'HOM05D000680', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000680' ), 'data_identifier' => 'HOM05D000680', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ) $gf_id = 'HOM05D000680' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000680' ) $data_identifier = 'HOM05D000680' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 13, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 23, 'bra' => (int) 17, 'can' => (int) 31, 'cansat' => (int) 1, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 6, 'col' => (int) 33, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 16, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 32, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 41, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 69, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 4, 'lsa' => (int) 17, 'mes' => (int) 2, 'mpo' => (int) 1, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 28, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 21, 'nnu' => (int) 15, 'oeu' => (int) 20, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 2, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 4, 'sci' => (int) 13, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 8, 'spa' => (int) 3, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 1, 'esa' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb436760' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ), 'gf_id' => 'HOM05D000680', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000680' ), 'data_identifier' => 'HOM05D000680', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ) $gf_id = 'HOM05D000680' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000680' ) $data_identifier = 'HOM05D000680' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 13, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 23, 'bra' => (int) 17, 'can' => (int) 31, 'cansat' => (int) 1, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 6, 'col' => (int) 33, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 16, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 32, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 41, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 69, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 4, 'lsa' => (int) 17, 'mes' => (int) 2, 'mpo' => (int) 1, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 28, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 21, 'nnu' => (int) 15, 'oeu' => (int) 20, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 2, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 4, 'sci' => (int) 13, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 8, 'spa' => (int) 3, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 1, 'esa' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb436760' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ), 'gf_id' => 'HOM05D000680', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000680' ), 'data_identifier' => 'HOM05D000680', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ) $gf_id = 'HOM05D000680' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000680' ) $data_identifier = 'HOM05D000680' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 13, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 23, 'bra' => (int) 17, 'can' => (int) 31, 'cansat' => (int) 1, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 6, 'col' => (int) 33, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 16, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 32, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 41, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 69, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 4, 'lsa' => (int) 17, 'mes' => (int) 2, 'mpo' => (int) 1, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 28, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 21, 'nnu' => (int) 15, 'oeu' => (int) 20, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 2, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 4, 'sci' => (int) 13, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 8, 'spa' => (int) 3, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 1, 'esa' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb436760' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ), 'gf_id' => 'HOM05D000680', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000680' ), 'data_identifier' => 'HOM05D000680', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ) $gf_id = 'HOM05D000680' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000680' ) $data_identifier = 'HOM05D000680' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 13, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 23, 'bra' => (int) 17, 'can' => (int) 31, 'cansat' => (int) 1, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 6, 'col' => (int) 33, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 16, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 32, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 41, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 69, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 4, 'lsa' => (int) 17, 'mes' => (int) 2, 'mpo' => (int) 1, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 28, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 21, 'nnu' => (int) 15, 'oeu' => (int) 20, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 2, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 4, 'sci' => (int) 13, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 8, 'spa' => (int) 3, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 1, 'esa' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb436760' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 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'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ), 'gf_id' => 'HOM05D000680', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000680' ), 'data_identifier' => 'HOM05D000680', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ) $gf_id = 'HOM05D000680' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000680' ) $data_identifier = 'HOM05D000680' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 13, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 23, 'bra' => (int) 17, 'can' => (int) 31, 'cansat' => (int) 1, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 6, 'col' => (int) 33, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 16, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 32, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 41, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 69, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 4, 'lsa' => (int) 17, 'mes' => (int) 2, 'mpo' => (int) 1, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 28, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 21, 'nnu' => (int) 15, 'oeu' => (int) 20, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 2, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 4, 'sci' => (int) 13, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 8, 'spa' => (int) 3, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 1, 'esa' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb436760' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ), 'gf_id' => 'HOM05D000680', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000680' ), 'data_identifier' => 'HOM05D000680', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ) $gf_id = 'HOM05D000680' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000680' ) $data_identifier = 'HOM05D000680' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 13, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 23, 'bra' => (int) 17, 'can' => (int) 31, 'cansat' => (int) 1, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 6, 'col' => (int) 33, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 16, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 32, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 41, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 69, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 4, 'lsa' => (int) 17, 'mes' => (int) 2, 'mpo' => (int) 1, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 28, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 21, 'nnu' => (int) 15, 'oeu' => (int) 20, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 2, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 4, 'sci' => (int) 13, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 8, 'spa' => (int) 3, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 1, 'esa' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb436760' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ), 'gf_id' => 'HOM05D000680', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000680' ), 'data_identifier' => 'HOM05D000680', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ) $gf_id = 'HOM05D000680' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000680' ) $data_identifier = 'HOM05D000680' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 13, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 23, 'bra' => (int) 17, 'can' => (int) 31, 'cansat' => (int) 1, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 6, 'col' => (int) 33, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 16, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 32, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 41, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 69, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 4, 'lsa' => (int) 17, 'mes' => (int) 2, 'mpo' => (int) 1, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 28, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 21, 'nnu' => (int) 15, 'oeu' => (int) 20, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 2, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 4, 'sci' => (int) 13, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 8, 'spa' => (int) 3, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 1, 'esa' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb436760' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ), 'gf_id' => 'HOM05D000680', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000680' ), 'data_identifier' => 'HOM05D000680', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ) $gf_id = 'HOM05D000680' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000680' ) $data_identifier = 'HOM05D000680' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 13, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 23, 'bra' => (int) 17, 'can' => (int) 31, 'cansat' => (int) 1, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 6, 'col' => (int) 33, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 16, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 32, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 41, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 69, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 4, 'lsa' => (int) 17, 'mes' => (int) 2, 'mpo' => (int) 1, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 28, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 21, 'nnu' => (int) 15, 'oeu' => (int) 20, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 2, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 4, 'sci' => (int) 13, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 8, 'spa' => (int) 3, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 1, 'esa' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb436760' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ), 'gf_id' => 'HOM05D000680', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000680' ), 'data_identifier' => 'HOM05D000680', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ) $gf_id = 'HOM05D000680' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000680' ) $data_identifier = 'HOM05D000680' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 13, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 23, 'bra' => (int) 17, 'can' => (int) 31, 'cansat' => (int) 1, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 6, 'col' => (int) 33, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 16, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 32, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 41, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 69, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 4, 'lsa' => (int) 17, 'mes' => (int) 2, 'mpo' => (int) 1, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 28, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 21, 'nnu' => (int) 15, 'oeu' => (int) 20, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 2, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 4, 'sci' => (int) 13, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 8, 'spa' => (int) 3, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 1, 'esa' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb436760' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ), 'gf_id' => 'HOM05D000680', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000680' ), 'data_identifier' => 'HOM05D000680', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ) $gf_id = 'HOM05D000680' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000680' ) $data_identifier = 'HOM05D000680' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 13, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 23, 'bra' => (int) 17, 'can' => (int) 31, 'cansat' => (int) 1, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 6, 'col' => (int) 33, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 16, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 32, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 41, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 69, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 4, 'lsa' => (int) 17, 'mes' => (int) 2, 'mpo' => (int) 1, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 28, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 21, 'nnu' => (int) 15, 'oeu' => (int) 20, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 2, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 4, 'sci' => (int) 13, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 8, 'spa' => (int) 3, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 1, 'esa' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb436760' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 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'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ), 'gf_id' => 'HOM05D000680', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000680' ), 'data_identifier' => 'HOM05D000680', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ) $gf_id = 'HOM05D000680' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000680' ) $data_identifier = 'HOM05D000680' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 13, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 23, 'bra' => (int) 17, 'can' => (int) 31, 'cansat' => (int) 1, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 6, 'col' => (int) 33, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 16, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 32, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 41, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 69, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 4, 'lsa' => (int) 17, 'mes' => (int) 2, 'mpo' => (int) 1, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 28, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 21, 'nnu' => (int) 15, 'oeu' => (int) 20, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 2, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 4, 'sci' => (int) 13, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 8, 'spa' => (int) 3, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 1, 'esa' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb436760' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ), 'gf_id' => 'HOM05D000680', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000680' ), 'data_identifier' => 'HOM05D000680', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ) $gf_id = 'HOM05D000680' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000680' ) $data_identifier = 'HOM05D000680' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 13, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 23, 'bra' => (int) 17, 'can' => (int) 31, 'cansat' => (int) 1, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 6, 'col' => (int) 33, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 16, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 32, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 41, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 69, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 4, 'lsa' => (int) 17, 'mes' => (int) 2, 'mpo' => (int) 1, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 28, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 21, 'nnu' => (int) 15, 'oeu' => (int) 20, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 2, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 4, 'sci' => (int) 13, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 8, 'spa' => (int) 3, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 1, 'esa' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb436760' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ), 'gf_id' => 'HOM05D000680', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000680' ), 'data_identifier' => 'HOM05D000680', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ) $gf_id = 'HOM05D000680' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000680' ) $data_identifier = 'HOM05D000680' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 13, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 23, 'bra' => (int) 17, 'can' => (int) 31, 'cansat' => (int) 1, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 6, 'col' => (int) 33, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 16, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 32, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 41, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 69, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 4, 'lsa' => (int) 17, 'mes' => (int) 2, 'mpo' => (int) 1, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 28, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 21, 'nnu' => (int) 15, 'oeu' => (int) 20, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 2, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 4, 'sci' => (int) 13, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 8, 'spa' => (int) 3, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 1, 'esa' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb436760' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ), 'gf_id' => 'HOM05D000680', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000680' ), 'data_identifier' => 'HOM05D000680', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ) $gf_id = 'HOM05D000680' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000680' ) $data_identifier = 'HOM05D000680' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 13, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 23, 'bra' => (int) 17, 'can' => (int) 31, 'cansat' => (int) 1, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 6, 'col' => (int) 33, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 16, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 32, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 41, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 69, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 4, 'lsa' => (int) 17, 'mes' => (int) 2, 'mpo' => (int) 1, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 28, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 21, 'nnu' => (int) 15, 'oeu' => (int) 20, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 2, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 4, 'sci' => (int) 13, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 8, 'spa' => (int) 3, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 1, 'esa' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb436760' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ), 'gf_id' => 'HOM05D000680', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000680' ), 'data_identifier' => 'HOM05D000680', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ) $gf_id = 'HOM05D000680' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000680' ) $data_identifier = 'HOM05D000680' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 13, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 23, 'bra' => (int) 17, 'can' => (int) 31, 'cansat' => (int) 1, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 6, 'col' => (int) 33, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 16, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 32, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 41, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 69, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 4, 'lsa' => (int) 17, 'mes' => (int) 2, 'mpo' => (int) 1, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 28, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 21, 'nnu' => (int) 15, 'oeu' => (int) 20, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 2, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 4, 'sci' => (int) 13, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 8, 'spa' => (int) 3, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 1, 'esa' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb436760' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ), 'gf_id' => 'HOM05D000680', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000680' ), 'data_identifier' => 'HOM05D000680', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ) $gf_id = 'HOM05D000680' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000680' ) $data_identifier = 'HOM05D000680' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 13, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 23, 'bra' => (int) 17, 'can' => (int) 31, 'cansat' => (int) 1, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 6, 'col' => (int) 33, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 16, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 32, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 41, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 69, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 4, 'lsa' => (int) 17, 'mes' => (int) 2, 'mpo' => (int) 1, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 28, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 21, 'nnu' => (int) 15, 'oeu' => (int) 20, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 2, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 4, 'sci' => (int) 13, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 8, 'spa' => (int) 3, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 1, 'esa' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb436760' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 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'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ), 'gf_id' => 'HOM05D000680', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000680' ), 'data_identifier' => 'HOM05D000680', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ) $gf_id = 'HOM05D000680' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000680' ) $data_identifier = 'HOM05D000680' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 13, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 23, 'bra' => (int) 17, 'can' => (int) 31, 'cansat' => (int) 1, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 6, 'col' => (int) 33, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 16, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 32, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 41, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 69, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 4, 'lsa' => (int) 17, 'mes' => (int) 2, 'mpo' => (int) 1, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 28, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 21, 'nnu' => (int) 15, 'oeu' => (int) 20, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 2, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 4, 'sci' => (int) 13, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 8, 'spa' => (int) 3, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 1, 'esa' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb436760' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ), 'gf_id' => 'HOM05D000680', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000680' ), 'data_identifier' => 'HOM05D000680', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ) $gf_id = 'HOM05D000680' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000680' ) $data_identifier = 'HOM05D000680' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 13, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 23, 'bra' => (int) 17, 'can' => (int) 31, 'cansat' => (int) 1, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 6, 'col' => (int) 33, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 16, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 32, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 41, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 69, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 4, 'lsa' => (int) 17, 'mes' => (int) 2, 'mpo' => (int) 1, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 28, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 21, 'nnu' => (int) 15, 'oeu' => (int) 20, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 2, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 4, 'sci' => (int) 13, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 8, 'spa' => (int) 3, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 1, 'esa' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb436760' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ), 'gf_id' => 'HOM05D000680', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000680' ), 'data_identifier' => 'HOM05D000680', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ) $gf_id = 'HOM05D000680' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000680' ) $data_identifier = 'HOM05D000680' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 13, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 23, 'bra' => (int) 17, 'can' => (int) 31, 'cansat' => (int) 1, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 6, 'col' => (int) 33, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 16, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 32, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 41, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 69, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 4, 'lsa' => (int) 17, 'mes' => (int) 2, 'mpo' => (int) 1, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 28, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 21, 'nnu' => (int) 15, 'oeu' => (int) 20, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 2, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 4, 'sci' => (int) 13, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 8, 'spa' => (int) 3, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 1, 'esa' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb436760' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ), 'gf_id' => 'HOM05D000680', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000680' ), 'data_identifier' => 'HOM05D000680', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ) $gf_id = 'HOM05D000680' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000680' ) $data_identifier = 'HOM05D000680' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 13, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 23, 'bra' => (int) 17, 'can' => (int) 31, 'cansat' => (int) 1, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 6, 'col' => (int) 33, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 16, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 32, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 41, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 69, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 4, 'lsa' => (int) 17, 'mes' => (int) 2, 'mpo' => (int) 1, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 28, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 21, 'nnu' => (int) 15, 'oeu' => (int) 20, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 2, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 4, 'sci' => (int) 13, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 8, 'spa' => (int) 3, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 1, 'esa' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb436760' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ), 'gf_id' => 'HOM05D000680', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000680' ), 'data_identifier' => 'HOM05D000680', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ) $gf_id = 'HOM05D000680' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000680' ) $data_identifier = 'HOM05D000680' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 13, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 23, 'bra' => (int) 17, 'can' => (int) 31, 'cansat' => (int) 1, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 6, 'col' => (int) 33, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 16, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 32, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 41, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 69, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 4, 'lsa' => (int) 17, 'mes' => (int) 2, 'mpo' => (int) 1, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 28, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 21, 'nnu' => (int) 15, 'oeu' => (int) 20, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 2, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 4, 'sci' => (int) 13, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 8, 'spa' => (int) 3, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 1, 'esa' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb436760' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ), 'gf_id' => 'HOM05D000680', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000680' ), 'data_identifier' => 'HOM05D000680', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ) $gf_id = 'HOM05D000680' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000680' ) $data_identifier = 'HOM05D000680' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 13, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 23, 'bra' => (int) 17, 'can' => (int) 31, 'cansat' => (int) 1, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 6, 'col' => (int) 33, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 16, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 32, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 41, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 69, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 4, 'lsa' => (int) 17, 'mes' => (int) 2, 'mpo' => (int) 1, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 28, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 21, 'nnu' => (int) 15, 'oeu' => (int) 20, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 2, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 4, 'sci' => (int) 13, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 8, 'spa' => (int) 3, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 1, 'esa' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb436760' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 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'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ), 'gf_id' => 'HOM05D000680', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000680' ), 'data_identifier' => 'HOM05D000680', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ) $gf_id = 'HOM05D000680' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000680' ) $data_identifier = 'HOM05D000680' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 13, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 23, 'bra' => (int) 17, 'can' => (int) 31, 'cansat' => (int) 1, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 6, 'col' => (int) 33, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 16, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 32, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 41, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 69, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 4, 'lsa' => (int) 17, 'mes' => (int) 2, 'mpo' => (int) 1, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 28, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 21, 'nnu' => (int) 15, 'oeu' => (int) 20, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 2, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 4, 'sci' => (int) 13, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 8, 'spa' => (int) 3, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 1, 'esa' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb436760' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ), 'gf_id' => 'HOM05D000680', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000680' ), 'data_identifier' => 'HOM05D000680', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ) $gf_id = 'HOM05D000680' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000680' ) $data_identifier = 'HOM05D000680' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 13, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 23, 'bra' => (int) 17, 'can' => (int) 31, 'cansat' => (int) 1, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 6, 'col' => (int) 33, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 16, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 32, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 41, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 69, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 4, 'lsa' => (int) 17, 'mes' => (int) 2, 'mpo' => (int) 1, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 28, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 21, 'nnu' => (int) 15, 'oeu' => (int) 20, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 2, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 4, 'sci' => (int) 13, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 8, 'spa' => (int) 3, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 1, 'esa' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb436760' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ), 'gf_id' => 'HOM05D000680', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000680' ), 'data_identifier' => 'HOM05D000680', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ) $gf_id = 'HOM05D000680' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000680' ) $data_identifier = 'HOM05D000680' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 13, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 23, 'bra' => (int) 17, 'can' => (int) 31, 'cansat' => (int) 1, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 6, 'col' => (int) 33, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 16, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 32, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 41, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 69, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 4, 'lsa' => (int) 17, 'mes' => (int) 2, 'mpo' => (int) 1, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 28, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 21, 'nnu' => (int) 15, 'oeu' => (int) 20, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 2, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 4, 'sci' => (int) 13, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 8, 'spa' => (int) 3, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 1, 'esa' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb436760' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ), 'gf_id' => 'HOM05D000680', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000680' ), 'data_identifier' => 'HOM05D000680', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ) $gf_id = 'HOM05D000680' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000680' ) $data_identifier = 'HOM05D000680' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 13, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 23, 'bra' => (int) 17, 'can' => (int) 31, 'cansat' => (int) 1, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 6, 'col' => (int) 33, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 16, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 32, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 41, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 69, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 4, 'lsa' => (int) 17, 'mes' => (int) 2, 'mpo' => (int) 1, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 28, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 21, 'nnu' => (int) 15, 'oeu' => (int) 20, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 2, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 4, 'sci' => (int) 13, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 8, 'spa' => (int) 3, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 1, 'esa' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb436760' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ), 'gf_id' => 'HOM05D000680', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000680' ), 'data_identifier' => 'HOM05D000680', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ) $gf_id = 'HOM05D000680' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000680' ) $data_identifier = 'HOM05D000680' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 13, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 23, 'bra' => (int) 17, 'can' => (int) 31, 'cansat' => (int) 1, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 6, 'col' => (int) 33, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 16, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 32, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 41, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 69, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 4, 'lsa' => (int) 17, 'mes' => (int) 2, 'mpo' => (int) 1, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 28, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 21, 'nnu' => (int) 15, 'oeu' => (int) 20, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 2, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 4, 'sci' => (int) 13, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 8, 'spa' => (int) 3, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 1, 'esa' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb436760' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ), 'gf_id' => 'HOM05D000680', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000680' ), 'data_identifier' => 'HOM05D000680', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ) $gf_id = 'HOM05D000680' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000680' ) $data_identifier = 'HOM05D000680' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 13, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 23, 'bra' => (int) 17, 'can' => (int) 31, 'cansat' => (int) 1, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 6, 'col' => (int) 33, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 16, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 32, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 41, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 69, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 4, 'lsa' => (int) 17, 'mes' => (int) 2, 'mpo' => (int) 1, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 28, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 21, 'nnu' => (int) 15, 'oeu' => (int) 20, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 2, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 4, 'sci' => (int) 13, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 8, 'spa' => (int) 3, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 1, 'esa' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb436760' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 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'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ), 'gf_id' => 'HOM05D000680', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000680' ), 'data_identifier' => 'HOM05D000680', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ) $gf_id = 'HOM05D000680' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000680' ) $data_identifier = 'HOM05D000680' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 13, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 23, 'bra' => (int) 17, 'can' => (int) 31, 'cansat' => (int) 1, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 6, 'col' => (int) 33, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 16, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 32, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 41, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 69, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 4, 'lsa' => (int) 17, 'mes' => (int) 2, 'mpo' => (int) 1, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 28, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 21, 'nnu' => (int) 15, 'oeu' => (int) 20, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 2, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 4, 'sci' => (int) 13, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 8, 'spa' => (int) 3, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 1, 'esa' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb436760' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ), 'gf_id' => 'HOM05D000680', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000680' ), 'data_identifier' => 'HOM05D000680', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ) $gf_id = 'HOM05D000680' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000680' ) $data_identifier = 'HOM05D000680' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 13, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 23, 'bra' => (int) 17, 'can' => (int) 31, 'cansat' => (int) 1, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 6, 'col' => (int) 33, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 16, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 32, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 41, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 69, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 4, 'lsa' => (int) 17, 'mes' => (int) 2, 'mpo' => (int) 1, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 28, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 21, 'nnu' => (int) 15, 'oeu' => (int) 20, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 2, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 4, 'sci' => (int) 13, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 8, 'spa' => (int) 3, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 1, 'esa' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb436760' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ), 'gf_id' => 'HOM05D000680', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000680' ), 'data_identifier' => 'HOM05D000680', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ) $gf_id = 'HOM05D000680' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000680' ) $data_identifier = 'HOM05D000680' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 13, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 23, 'bra' => (int) 17, 'can' => (int) 31, 'cansat' => (int) 1, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 6, 'col' => (int) 33, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 16, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 32, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 41, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 69, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 4, 'lsa' => (int) 17, 'mes' => (int) 2, 'mpo' => (int) 1, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 28, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 21, 'nnu' => (int) 15, 'oeu' => (int) 20, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 2, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 4, 'sci' => (int) 13, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 8, 'spa' => (int) 3, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 1, 'esa' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb436760' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ), 'gf_id' => 'HOM05D000680', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000680' ), 'data_identifier' => 'HOM05D000680', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ) $gf_id = 'HOM05D000680' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000680' ) $data_identifier = 'HOM05D000680' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 13, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 23, 'bra' => (int) 17, 'can' => (int) 31, 'cansat' => (int) 1, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 6, 'col' => (int) 33, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 16, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 32, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 41, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 69, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 4, 'lsa' => (int) 17, 'mes' => (int) 2, 'mpo' => (int) 1, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 28, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 21, 'nnu' => (int) 15, 'oeu' => (int) 20, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 2, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 4, 'sci' => (int) 13, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 8, 'spa' => (int) 3, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 1, 'esa' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb436760' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ), 'gf_id' => 'HOM05D000680', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000680' ), 'data_identifier' => 'HOM05D000680', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ) $gf_id = 'HOM05D000680' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000680' ) $data_identifier = 'HOM05D000680' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 13, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 23, 'bra' => (int) 17, 'can' => (int) 31, 'cansat' => (int) 1, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 6, 'col' => (int) 33, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 16, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 32, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 41, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 69, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 4, 'lsa' => (int) 17, 'mes' => (int) 2, 'mpo' => (int) 1, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 28, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 21, 'nnu' => (int) 15, 'oeu' => (int) 20, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 2, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 4, 'sci' => (int) 13, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 8, 'spa' => (int) 3, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 1, 'esa' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb436760' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ), 'gf_id' => 'HOM05D000680', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000680' ), 'data_identifier' => 'HOM05D000680', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ) $gf_id = 'HOM05D000680' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000680' ) $data_identifier = 'HOM05D000680' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 13, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 23, 'bra' => (int) 17, 'can' => (int) 31, 'cansat' => (int) 1, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 6, 'col' => (int) 33, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 16, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 32, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 41, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 69, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 4, 'lsa' => (int) 17, 'mes' => (int) 2, 'mpo' => (int) 1, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 28, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 21, 'nnu' => (int) 15, 'oeu' => (int) 20, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 2, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 4, 'sci' => (int) 13, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 8, 'spa' => (int) 3, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 1, 'esa' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb436760' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 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'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ), 'gf_id' => 'HOM05D000680', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000680' ), 'data_identifier' => 'HOM05D000680', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ) $gf_id = 'HOM05D000680' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000680' ) $data_identifier = 'HOM05D000680' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 13, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 23, 'bra' => (int) 17, 'can' => (int) 31, 'cansat' => (int) 1, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 6, 'col' => (int) 33, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 16, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 32, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 41, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 69, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 4, 'lsa' => (int) 17, 'mes' => (int) 2, 'mpo' => (int) 1, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 28, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 21, 'nnu' => (int) 15, 'oeu' => (int) 20, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 2, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 4, 'sci' => (int) 13, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 8, 'spa' => (int) 3, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 1, 'esa' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb436760' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ), 'gf_id' => 'HOM05D000680', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000680' ), 'data_identifier' => 'HOM05D000680', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ) $gf_id = 'HOM05D000680' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000680' ) $data_identifier = 'HOM05D000680' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 13, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 23, 'bra' => (int) 17, 'can' => (int) 31, 'cansat' => (int) 1, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 6, 'col' => (int) 33, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 16, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 32, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 41, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 69, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 4, 'lsa' => (int) 17, 'mes' => (int) 2, 'mpo' => (int) 1, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 28, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 21, 'nnu' => (int) 15, 'oeu' => (int) 20, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 2, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 4, 'sci' => (int) 13, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 8, 'spa' => (int) 3, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 1, 'esa' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb436760' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ), 'gf_id' => 'HOM05D000680', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000680' ), 'data_identifier' => 'HOM05D000680', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ) $gf_id = 'HOM05D000680' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000680' ) $data_identifier = 'HOM05D000680' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 13, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 23, 'bra' => (int) 17, 'can' => (int) 31, 'cansat' => (int) 1, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 6, 'col' => (int) 33, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 16, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 32, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 41, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 69, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 4, 'lsa' => (int) 17, 'mes' => (int) 2, 'mpo' => (int) 1, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 28, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 21, 'nnu' => (int) 15, 'oeu' => (int) 20, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 2, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 4, 'sci' => (int) 13, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 8, 'spa' => (int) 3, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 1, 'esa' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb436760' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ), 'gf_id' => 'HOM05D000680', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000680' ), 'data_identifier' => 'HOM05D000680', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ) $gf_id = 'HOM05D000680' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000680' ) $data_identifier = 'HOM05D000680' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 13, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 23, 'bra' => (int) 17, 'can' => (int) 31, 'cansat' => (int) 1, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 6, 'col' => (int) 33, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 16, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 32, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 41, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 69, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 4, 'lsa' => (int) 17, 'mes' => (int) 2, 'mpo' => (int) 1, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 28, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 21, 'nnu' => (int) 15, 'oeu' => (int) 20, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 2, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 4, 'sci' => (int) 13, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 8, 'spa' => (int) 3, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 1, 'esa' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb436760' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ), 'gf_id' => 'HOM05D000680', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000680' ), 'data_identifier' => 'HOM05D000680', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ) $gf_id = 'HOM05D000680' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000680' ) $data_identifier = 'HOM05D000680' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 13, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 23, 'bra' => (int) 17, 'can' => (int) 31, 'cansat' => (int) 1, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 6, 'col' => (int) 33, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 16, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 32, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 41, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 69, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 4, 'lsa' => (int) 17, 'mes' => (int) 2, 'mpo' => (int) 1, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 28, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 21, 'nnu' => (int) 15, 'oeu' => (int) 20, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 2, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 4, 'sci' => (int) 13, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 8, 'spa' => (int) 3, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 1, 'esa' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb436760' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ), 'gf_id' => 'HOM05D000680', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000680' ), 'data_identifier' => 'HOM05D000680', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ) $gf_id = 'HOM05D000680' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000680' ) $data_identifier = 'HOM05D000680' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 13, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 23, 'bra' => (int) 17, 'can' => (int) 31, 'cansat' => (int) 1, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 6, 'col' => (int) 33, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 16, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 32, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 41, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 69, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 4, 'lsa' => (int) 17, 'mes' => (int) 2, 'mpo' => (int) 1, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 28, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 21, 'nnu' => (int) 15, 'oeu' => (int) 20, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 2, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 4, 'sci' => (int) 13, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 8, 'spa' => (int) 3, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 1, 'esa' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb436760' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 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'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ), 'gf_id' => 'HOM05D000680', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000680' ), 'data_identifier' => 'HOM05D000680', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ) $gf_id = 'HOM05D000680' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000680' ) $data_identifier = 'HOM05D000680' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 13, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 23, 'bra' => (int) 17, 'can' => (int) 31, 'cansat' => (int) 1, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 6, 'col' => (int) 33, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 16, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 32, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 41, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 69, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 4, 'lsa' => (int) 17, 'mes' => (int) 2, 'mpo' => (int) 1, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 28, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 21, 'nnu' => (int) 15, 'oeu' => (int) 20, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 2, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 4, 'sci' => (int) 13, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 8, 'spa' => (int) 3, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 1, 'esa' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb436760' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ), 'gf_id' => 'HOM05D000680', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000680' ), 'data_identifier' => 'HOM05D000680', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ) $gf_id = 'HOM05D000680' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000680' ) $data_identifier = 'HOM05D000680' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 13, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 23, 'bra' => (int) 17, 'can' => (int) 31, 'cansat' => (int) 1, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 6, 'col' => (int) 33, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 16, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 32, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 41, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 69, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 4, 'lsa' => (int) 17, 'mes' => (int) 2, 'mpo' => (int) 1, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 28, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 21, 'nnu' => (int) 15, 'oeu' => (int) 20, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 2, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 4, 'sci' => (int) 13, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 8, 'spa' => (int) 3, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 1, 'esa' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb436760' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ), 'gf_id' => 'HOM05D000680', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000680' ), 'data_identifier' => 'HOM05D000680', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ) $gf_id = 'HOM05D000680' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000680' ) $data_identifier = 'HOM05D000680' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 13, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 23, 'bra' => (int) 17, 'can' => (int) 31, 'cansat' => (int) 1, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 6, 'col' => (int) 33, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 16, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 32, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 41, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 69, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 4, 'lsa' => (int) 17, 'mes' => (int) 2, 'mpo' => (int) 1, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 28, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 21, 'nnu' => (int) 15, 'oeu' => (int) 20, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 2, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 4, 'sci' => (int) 13, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 8, 'spa' => (int) 3, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 1, 'esa' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb436760' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ), 'gf_id' => 'HOM05D000680', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000680' ), 'data_identifier' => 'HOM05D000680', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ) $gf_id = 'HOM05D000680' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000680' ) $data_identifier = 'HOM05D000680' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 13, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 23, 'bra' => (int) 17, 'can' => (int) 31, 'cansat' => (int) 1, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 6, 'col' => (int) 33, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 16, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 32, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 41, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 69, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 4, 'lsa' => (int) 17, 'mes' => (int) 2, 'mpo' => (int) 1, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 28, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 21, 'nnu' => (int) 15, 'oeu' => (int) 20, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 2, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 4, 'sci' => (int) 13, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 8, 'spa' => (int) 3, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 1, 'esa' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb436760' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ), 'gf_id' => 'HOM05D000680', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000680' ), 'data_identifier' => 'HOM05D000680', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ) $gf_id = 'HOM05D000680' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000680' ) $data_identifier = 'HOM05D000680' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 13, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 23, 'bra' => (int) 17, 'can' => (int) 31, 'cansat' => (int) 1, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 6, 'col' => (int) 33, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 16, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 32, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 41, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 69, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 4, 'lsa' => (int) 17, 'mes' => (int) 2, 'mpo' => (int) 1, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 28, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 21, 'nnu' => (int) 15, 'oeu' => (int) 20, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 2, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 4, 'sci' => (int) 13, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 8, 'spa' => (int) 3, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 1, 'esa' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb436760' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ), 'gf_id' => 'HOM05D000680', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000680' ), 'data_identifier' => 'HOM05D000680', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ) $gf_id = 'HOM05D000680' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000680' ) $data_identifier = 'HOM05D000680' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 13, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 23, 'bra' => (int) 17, 'can' => (int) 31, 'cansat' => (int) 1, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 6, 'col' => (int) 33, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 16, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 32, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 41, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 69, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 4, 'lsa' => (int) 17, 'mes' => (int) 2, 'mpo' => (int) 1, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 28, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 21, 'nnu' => (int) 15, 'oeu' => (int) 20, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 2, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 4, 'sci' => (int) 13, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 8, 'spa' => (int) 3, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 1, 'esa' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb436760' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 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'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ), 'gf_id' => 'HOM05D000680', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000680' ), 'data_identifier' => 'HOM05D000680', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ) $gf_id = 'HOM05D000680' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000680' ) $data_identifier = 'HOM05D000680' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 13, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 23, 'bra' => (int) 17, 'can' => (int) 31, 'cansat' => (int) 1, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 6, 'col' => (int) 33, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 16, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 32, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 41, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 69, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 4, 'lsa' => (int) 17, 'mes' => (int) 2, 'mpo' => (int) 1, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 28, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 21, 'nnu' => (int) 15, 'oeu' => (int) 20, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 2, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 4, 'sci' => (int) 13, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 8, 'spa' => (int) 3, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 1, 'esa' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb436760' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ), 'gf_id' => 'HOM05D000680', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000680' ), 'data_identifier' => 'HOM05D000680', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ) $gf_id = 'HOM05D000680' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000680' ) $data_identifier = 'HOM05D000680' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 13, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 23, 'bra' => (int) 17, 'can' => (int) 31, 'cansat' => (int) 1, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 6, 'col' => (int) 33, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 16, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 32, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 41, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 69, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 4, 'lsa' => (int) 17, 'mes' => (int) 2, 'mpo' => (int) 1, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 28, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 21, 'nnu' => (int) 15, 'oeu' => (int) 20, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 2, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 4, 'sci' => (int) 13, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 8, 'spa' => (int) 3, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 1, 'esa' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb436760' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ), 'gf_id' => 'HOM05D000680', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000680' ), 'data_identifier' => 'HOM05D000680', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ) $gf_id = 'HOM05D000680' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000680' ) $data_identifier = 'HOM05D000680' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 13, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 23, 'bra' => (int) 17, 'can' => (int) 31, 'cansat' => (int) 1, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 6, 'col' => (int) 33, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 16, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 32, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 41, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 69, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 4, 'lsa' => (int) 17, 'mes' => (int) 2, 'mpo' => (int) 1, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 28, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 21, 'nnu' => (int) 15, 'oeu' => (int) 20, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 2, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 4, 'sci' => (int) 13, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 8, 'spa' => (int) 3, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 1, 'esa' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb436760' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ), 'gf_id' => 'HOM05D000680', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000680' ), 'data_identifier' => 'HOM05D000680', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ) $gf_id = 'HOM05D000680' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000680' ) $data_identifier = 'HOM05D000680' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 13, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 23, 'bra' => (int) 17, 'can' => (int) 31, 'cansat' => (int) 1, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 6, 'col' => (int) 33, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 16, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 32, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 41, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 69, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 4, 'lsa' => (int) 17, 'mes' => (int) 2, 'mpo' => (int) 1, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 28, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 21, 'nnu' => (int) 15, 'oeu' => (int) 20, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 2, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 4, 'sci' => (int) 13, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 8, 'spa' => (int) 3, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 1, 'esa' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb436760' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ), 'gf_id' => 'HOM05D000680', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000680' ), 'data_identifier' => 'HOM05D000680', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ) $gf_id = 'HOM05D000680' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000680' ) $data_identifier = 'HOM05D000680' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 13, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 23, 'bra' => (int) 17, 'can' => (int) 31, 'cansat' => (int) 1, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 6, 'col' => (int) 33, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 16, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 32, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 41, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 69, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 4, 'lsa' => (int) 17, 'mes' => (int) 2, 'mpo' => (int) 1, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 28, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 21, 'nnu' => (int) 15, 'oeu' => (int) 20, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 2, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 4, 'sci' => (int) 13, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 8, 'spa' => (int) 3, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 1, 'esa' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb436760' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ), 'gf_id' => 'HOM05D000680', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000680' ), 'data_identifier' => 'HOM05D000680', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ) $gf_id = 'HOM05D000680' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000680' ) $data_identifier = 'HOM05D000680' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 13, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 23, 'bra' => (int) 17, 'can' => (int) 31, 'cansat' => (int) 1, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 6, 'col' => (int) 33, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 16, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 32, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 41, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 69, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 4, 'lsa' => (int) 17, 'mes' => (int) 2, 'mpo' => (int) 1, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 28, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 21, 'nnu' => (int) 15, 'oeu' => (int) 20, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 2, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 4, 'sci' => (int) 13, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 8, 'spa' => (int) 3, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 1, 'esa' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb436760' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 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'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ), 'gf_id' => 'HOM05D000680', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000680' ), 'data_identifier' => 'HOM05D000680', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ) $gf_id = 'HOM05D000680' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000680' ) $data_identifier = 'HOM05D000680' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 13, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 23, 'bra' => (int) 17, 'can' => (int) 31, 'cansat' => (int) 1, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 6, 'col' => (int) 33, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 16, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 32, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 41, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 69, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 4, 'lsa' => (int) 17, 'mes' => (int) 2, 'mpo' => (int) 1, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 28, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 21, 'nnu' => (int) 15, 'oeu' => (int) 20, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 2, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 4, 'sci' => (int) 13, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 8, 'spa' => (int) 3, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 1, 'esa' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb436760' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ), 'gf_id' => 'HOM05D000680', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000680' ), 'data_identifier' => 'HOM05D000680', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ) $gf_id = 'HOM05D000680' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000680' ) $data_identifier = 'HOM05D000680' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 13, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 23, 'bra' => (int) 17, 'can' => (int) 31, 'cansat' => (int) 1, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 6, 'col' => (int) 33, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 16, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 32, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 41, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 69, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 4, 'lsa' => (int) 17, 'mes' => (int) 2, 'mpo' => (int) 1, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 28, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 21, 'nnu' => (int) 15, 'oeu' => (int) 20, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 2, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 4, 'sci' => (int) 13, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 8, 'spa' => (int) 3, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 1, 'esa' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb436760' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ), 'gf_id' => 'HOM05D000680', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000680' ), 'data_identifier' => 'HOM05D000680', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ) $gf_id = 'HOM05D000680' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000680' ) $data_identifier = 'HOM05D000680' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 13, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 23, 'bra' => (int) 17, 'can' => (int) 31, 'cansat' => (int) 1, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 6, 'col' => (int) 33, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 16, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 32, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 41, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 69, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 4, 'lsa' => (int) 17, 'mes' => (int) 2, 'mpo' => (int) 1, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 28, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 21, 'nnu' => (int) 15, 'oeu' => (int) 20, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 2, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 4, 'sci' => (int) 13, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 8, 'spa' => (int) 3, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 1, 'esa' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb436760' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ), 'gf_id' => 'HOM05D000680', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000680' ), 'data_identifier' => 'HOM05D000680', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ) $gf_id = 'HOM05D000680' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000680' ) $data_identifier = 'HOM05D000680' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 13, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 23, 'bra' => (int) 17, 'can' => (int) 31, 'cansat' => (int) 1, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 6, 'col' => (int) 33, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 16, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 32, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 41, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 69, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 4, 'lsa' => (int) 17, 'mes' => (int) 2, 'mpo' => (int) 1, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 28, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 21, 'nnu' => (int) 15, 'oeu' => (int) 20, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 2, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 4, 'sci' => (int) 13, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 8, 'spa' => (int) 3, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 1, 'esa' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb436760' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ), 'gf_id' => 'HOM05D000680', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000680' ), 'data_identifier' => 'HOM05D000680', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ) $gf_id = 'HOM05D000680' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000680' ) $data_identifier = 'HOM05D000680' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 13, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 23, 'bra' => (int) 17, 'can' => (int) 31, 'cansat' => (int) 1, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 6, 'col' => (int) 33, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 16, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 32, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 41, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 69, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 4, 'lsa' => (int) 17, 'mes' => (int) 2, 'mpo' => (int) 1, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 28, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 21, 'nnu' => (int) 15, 'oeu' => (int) 20, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 2, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 4, 'sci' => (int) 13, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 8, 'spa' => (int) 3, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 1, 'esa' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb436760' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ), 'gf_id' => 'HOM05D000680', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000680' ), 'data_identifier' => 'HOM05D000680', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ) $gf_id = 'HOM05D000680' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000680' ) $data_identifier = 'HOM05D000680' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 13, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 23, 'bra' => (int) 17, 'can' => (int) 31, 'cansat' => (int) 1, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 6, 'col' => (int) 33, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 16, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 32, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 41, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 69, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 4, 'lsa' => (int) 17, 'mes' => (int) 2, 'mpo' => (int) 1, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 28, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 21, 'nnu' => (int) 15, 'oeu' => (int) 20, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 2, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 4, 'sci' => (int) 13, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 8, 'spa' => (int) 3, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 1, 'esa' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb436760' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 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'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ), 'gf_id' => 'HOM05D000680', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000680' ), 'data_identifier' => 'HOM05D000680', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ) $gf_id = 'HOM05D000680' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000680' ) $data_identifier = 'HOM05D000680' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 13, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 23, 'bra' => (int) 17, 'can' => (int) 31, 'cansat' => (int) 1, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 6, 'col' => (int) 33, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 16, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 32, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 41, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 69, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 4, 'lsa' => (int) 17, 'mes' => (int) 2, 'mpo' => (int) 1, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 28, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 21, 'nnu' => (int) 15, 'oeu' => (int) 20, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 2, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 4, 'sci' => (int) 13, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 8, 'spa' => (int) 3, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 1, 'esa' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb436760' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ), 'gf_id' => 'HOM05D000680', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000680' ), 'data_identifier' => 'HOM05D000680', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ) $gf_id = 'HOM05D000680' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000680' ) $data_identifier = 'HOM05D000680' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 13, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 23, 'bra' => (int) 17, 'can' => (int) 31, 'cansat' => (int) 1, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 6, 'col' => (int) 33, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 16, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 32, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 41, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 69, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 4, 'lsa' => (int) 17, 'mes' => (int) 2, 'mpo' => (int) 1, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 28, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 21, 'nnu' => (int) 15, 'oeu' => (int) 20, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 2, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 4, 'sci' => (int) 13, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 8, 'spa' => (int) 3, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 1, 'esa' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb436760' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ), 'gf_id' => 'HOM05D000680', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000680' ), 'data_identifier' => 'HOM05D000680', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ) $gf_id = 'HOM05D000680' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000680' ) $data_identifier = 'HOM05D000680' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 13, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 23, 'bra' => (int) 17, 'can' => (int) 31, 'cansat' => (int) 1, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 6, 'col' => (int) 33, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 16, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 32, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 41, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 69, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 4, 'lsa' => (int) 17, 'mes' => (int) 2, 'mpo' => (int) 1, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 28, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 21, 'nnu' => (int) 15, 'oeu' => (int) 20, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 2, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 4, 'sci' => (int) 13, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 8, 'spa' => (int) 3, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 1, 'esa' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb436760' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ), 'gf_id' => 'HOM05D000680', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000680' ), 'data_identifier' => 'HOM05D000680', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ) $gf_id = 'HOM05D000680' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000680' ) $data_identifier = 'HOM05D000680' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 13, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 23, 'bra' => (int) 17, 'can' => (int) 31, 'cansat' => (int) 1, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 6, 'col' => (int) 33, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 16, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 32, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 41, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 69, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 4, 'lsa' => (int) 17, 'mes' => (int) 2, 'mpo' => (int) 1, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 28, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 21, 'nnu' => (int) 15, 'oeu' => (int) 20, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 2, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 4, 'sci' => (int) 13, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 8, 'spa' => (int) 3, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 1, 'esa' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb436760' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ), 'gf_id' => 'HOM05D000680', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000680' ), 'data_identifier' => 'HOM05D000680', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ) $gf_id = 'HOM05D000680' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000680' ) $data_identifier = 'HOM05D000680' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 13, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 23, 'bra' => (int) 17, 'can' => (int) 31, 'cansat' => (int) 1, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 6, 'col' => (int) 33, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 16, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 32, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 41, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 69, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 4, 'lsa' => (int) 17, 'mes' => (int) 2, 'mpo' => (int) 1, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 28, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 21, 'nnu' => (int) 15, 'oeu' => (int) 20, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 2, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 4, 'sci' => (int) 13, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 8, 'spa' => (int) 3, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 1, 'esa' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb436760' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ), 'gf_id' => 'HOM05D000680', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000680' ), 'data_identifier' => 'HOM05D000680', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ) $gf_id = 'HOM05D000680' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000680' ) $data_identifier = 'HOM05D000680' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 13, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 23, 'bra' => (int) 17, 'can' => (int) 31, 'cansat' => (int) 1, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 6, 'col' => (int) 33, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 16, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 32, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 41, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 69, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 4, 'lsa' => (int) 17, 'mes' => (int) 2, 'mpo' => (int) 1, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 28, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 21, 'nnu' => (int) 15, 'oeu' => (int) 20, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 2, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 4, 'sci' => (int) 13, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 8, 'spa' => (int) 3, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 1, 'esa' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb436760' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 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'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ), 'gf_id' => 'HOM05D000680', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000680' ), 'data_identifier' => 'HOM05D000680', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ) $gf_id = 'HOM05D000680' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000680' ) $data_identifier = 'HOM05D000680' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 13, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 23, 'bra' => (int) 17, 'can' => (int) 31, 'cansat' => (int) 1, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 6, 'col' => (int) 33, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 16, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 32, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 41, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 69, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 4, 'lsa' => (int) 17, 'mes' => (int) 2, 'mpo' => (int) 1, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 28, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 21, 'nnu' => (int) 15, 'oeu' => (int) 20, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 2, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 4, 'sci' => (int) 13, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 8, 'spa' => (int) 3, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 1, 'esa' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb436760' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ), 'gf_id' => 'HOM05D000680', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000680' ), 'data_identifier' => 'HOM05D000680', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ) $gf_id = 'HOM05D000680' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000680' ) $data_identifier = 'HOM05D000680' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 13, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 23, 'bra' => (int) 17, 'can' => (int) 31, 'cansat' => (int) 1, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 6, 'col' => (int) 33, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 16, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 32, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 41, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 69, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 4, 'lsa' => (int) 17, 'mes' => (int) 2, 'mpo' => (int) 1, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 28, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 21, 'nnu' => (int) 15, 'oeu' => (int) 20, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 2, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 4, 'sci' => (int) 13, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 8, 'spa' => (int) 3, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 1, 'esa' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb436760' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ), 'gf_id' => 'HOM05D000680', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000680' ), 'data_identifier' => 'HOM05D000680', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ) $gf_id = 'HOM05D000680' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000680' ) $data_identifier = 'HOM05D000680' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 13, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 23, 'bra' => (int) 17, 'can' => (int) 31, 'cansat' => (int) 1, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 6, 'col' => (int) 33, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 16, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 32, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 41, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 69, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 4, 'lsa' => (int) 17, 'mes' => (int) 2, 'mpo' => (int) 1, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 28, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 21, 'nnu' => (int) 15, 'oeu' => (int) 20, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 2, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 4, 'sci' => (int) 13, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 8, 'spa' => (int) 3, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 1, 'esa' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb436760' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ), 'gf_id' => 'HOM05D000680', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000680' ), 'data_identifier' => 'HOM05D000680', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ) $gf_id = 'HOM05D000680' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000680' ) $data_identifier = 'HOM05D000680' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 13, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 23, 'bra' => (int) 17, 'can' => (int) 31, 'cansat' => (int) 1, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 6, 'col' => (int) 33, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 16, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 32, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 41, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 69, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 4, 'lsa' => (int) 17, 'mes' => (int) 2, 'mpo' => (int) 1, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 28, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 21, 'nnu' => (int) 15, 'oeu' => (int) 20, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 2, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 4, 'sci' => (int) 13, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 8, 'spa' => (int) 3, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 1, 'esa' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb436760' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ), 'gf_id' => 'HOM05D000680', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000680' ), 'data_identifier' => 'HOM05D000680', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ) $gf_id = 'HOM05D000680' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000680' ) $data_identifier = 'HOM05D000680' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 13, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 23, 'bra' => (int) 17, 'can' => (int) 31, 'cansat' => (int) 1, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 6, 'col' => (int) 33, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 16, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 32, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 41, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 69, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 4, 'lsa' => (int) 17, 'mes' => (int) 2, 'mpo' => (int) 1, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 28, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 21, 'nnu' => (int) 15, 'oeu' => (int) 20, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 2, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 4, 'sci' => (int) 13, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 8, 'spa' => (int) 3, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 1, 'esa' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb436760' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ), 'gf_id' => 'HOM05D000680', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000680' ), 'data_identifier' => 'HOM05D000680', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ) $gf_id = 'HOM05D000680' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000680' ) $data_identifier = 'HOM05D000680' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 13, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 23, 'bra' => (int) 17, 'can' => (int) 31, 'cansat' => (int) 1, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 6, 'col' => (int) 33, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 16, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 32, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 41, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 69, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 4, 'lsa' => (int) 17, 'mes' => (int) 2, 'mpo' => (int) 1, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 28, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 21, 'nnu' => (int) 15, 'oeu' => (int) 20, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 2, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 4, 'sci' => (int) 13, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 8, 'spa' => (int) 3, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 1, 'esa' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb436760' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 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'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ), 'gf_id' => 'HOM05D000680', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000680' ), 'data_identifier' => 'HOM05D000680', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000680', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '840', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p04050' => 'bna', 'A03p04060' => 'bna', 'A06p23220' => 'bna', 'A10p28070' => 'bna', 'A10p28080' => 'bna', 'Aa31LG1G18130' => 'aar', 'Aa31LG3G17860' => 'aar', 'Aa31LG3G17870' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_340.193' => 'aag', 'Actinidia11577' => 'ach', 'Actinidia14938' => 'ach', 'Actinidia15909' => 'ach', 'Actinidia16700' => 'ach', 'Actinidia24606' => 'ach', 'Actinidia31988' => 'ach', 'Actinidia33627' => 'ach', 'Actinidia34903' => 'ach', 'Actinidia36346' => 'ach', 'Actinidia36347' => 'ach', 'Ah.02g128130' => 'amhyb', 'Ah.02g131550' => 'amhyb', 'Ah.03g138530' => 'amhyb', 'Ah.10g027530' => 'amhyb', 'Ah.10g027840' => 'amhyb', 'AL2G20670' => 'aly', 'AL2G21080' => 'aly', 'AL2G21500' => 'aly', 'AL2G21510' => 'aly', 'AL6G19400' => 'aly', 'AL6G19410' => 'aly', 'AL6G19430' => 'aly', 'Aqoxy3G03981_Aqoxy3G03982' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0TL4CS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.30U8ZL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.31RLYT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.487MWI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5QJ653' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5XLW1T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CALT29' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D1I3TH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DT26DQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G4W793' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QU8SEY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.V9EYC9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YF6YZL' => 'arhy', 'AT5G08670' => 'ath', 'AT5G08680' => 'ath', 'AT5G08690' => 'ath', 'ATCG00470' => 'ath', 'ATCG00480' => 'ath', 'ATR0303G001' => 'atr', 'ATR0303G002' => 'atr', 'ATR0329G026' => 'atr', 'ATR0430G001' => 'atr', 'ATR0443G002' => 'atr', 'ATR0559G106' => 'atr', 'ATR0580G171' => 'atr', 'ATR0661G035' => 'atr', 'ATR0691G262' => 'atr', 'ATR0691G311' => 'atr', 'ATR0739G023' => 'atr', 'ATR0772G009' => 'atr', 'ATR1044G001' => 'atr', 'Atru.chr1.1632' => 'acertr', 'Atru.chr1.3577' => 'acertr', 'Atru.chr11.352' => 'acertr', 'Atru.ctg752_3.9' => 'acertr', 'AUR62002367' => 'cqu', 'AUR62002760' => 'cqu', 'AUR62004683' => 'cqu', 'AUR62006477' => 'cqu', 'AUR62014124' => 'cqu', 'AUR62032523' => 'cqu', 'AUR62032524' => 'cqu', 'AUR62037742' => 'cqu', 'BcaB01g01304' => 'bca', 'BcaB01g05577' => 'bca', 'BcaB01g05578' => 'bca', 'BcaB01g05650' => 'bca', 'BcaB02g10240' => 'bca', 'BcaB02g11520' => 'bca', 'BcaB04g17477' => 'bca', 'BcaB05g21574' => 'bca', 'BcaB05g21575' => 'bca', 'BcaB08g37231' => 'bca', 'BcaB08g37232' => 'bca', 'BcaB08g37233' => 'bca', 'BcaC03g13238' => 'bca', 'BcaC03g13239' => 'bca', 'BcaC03g16540' => 'bca', 'BcaC03g16541' => 'bca', 'BcaC04g20696' => 'bca', 'BcaC04g20698' => 'bca', 'BcaNung04772' => 'bca', 'BcaNung05450' => 'bca', 'BNapus_Darmor_BZH_scaffold_253p00190' => 'bna', 'BNapus_Darmor_BZH_scaffold_287p00110' => 'bna', 'BolC2t06329H' => 'bol', 'BolC2t06330H' => 'bol', 'BolC2t06331H' => 'bol', 'BolC2t08929H' => 'bol', 'BolC3t12982H' => 'bol', 'BolC3t12983H' => 'bol', 'BolC7t41721H' => 'bol', 'BolC9t56938H' => 'bol', 'BolC9t59575H' => 'bol', 'BolC9t59576H' => 'bol', 'BolSC29t60462H' => 'bol', 'BolSC29t60463H' => 'bol', 'BolSC29t60585H' => 'bol', 'BolSC35t60642H' => 'bol', 'BolSC35t60754H' => 'bol', 'BolSC35t60755H' => 'bol', 'BolSC35t60756H' => 'bol', 'BolSC45t60862H' => 'bol', 'BolSC45t60949H' => 'bol', 'BolSC46t60996H' => 'bol', 'BolSC46t61039H' => 'bol', 'BolSC47t61101H' => 'bol', 'BolSC47t61123H' => 'bol', 'BraA02t04964Z' => 'bra', 'BraA02t04965Z' => 'bra', 'BraA03t09748Z' => 'bra', 'BraA03t09749Z' => 'bra', 'BraA06t25425Z' => 'bra', 'BraA09t38713Z' => 'bra', 'BraA10t44856Z' => 'bra', 'BraA10t44857Z' => 'bra', 'BraSC140t45577Z' => 'bra', 'BraSC25t45844Z' => 'bra', 'BraSC25t45870Z' => 'bra', 'BraSC25t45871Z' => 'bra', 'BraSC58t46416Z' => 'bra', 'BraSC58t46417Z' => 'bra', 'BraSC58t46486Z' => 'bra', 'BraSC58t46487Z' => 'bra', 'BraSC59t46595Z' => 'bra', 'C02p03700' => 'bna', 'C02p03710' => 'bna', 'C02p43500' => 'bna', 'C03p04500' => 'bna', 'C03p04510' => 'bna', 'C09p40520' => 'bna', 'C09p68270' => 'bna', 'C09p68280' => 'bna', 'CAN.G1001.35' => 'can', 'CAN.G1183.5' => 'can', 'CAN.G1185.6' => 'can', 'CAN.G1185.7' => 'can', 'CAN.G12.5' => 'can', 'CAN.G1235.22' => 'can', 'CAN.G129.8' => 'can', 'CAN.G1478.11' => 'can', 'CAN.G1489.8' => 'can', 'CAN.G1693.4' => 'can', 'CAN.G170.12' => 'can', 'CAN.G171.5' => 'can', 'CAN.G1897.2' => 'can', 'CAN.G1897.3' => 'can', 'CAN.G193.19' => 'can', 'CAN.G212.7' => 'can', 'CAN.G219.24' => 'can', 'CAN.G219.27' => 'can', 'CAN.G316.10' => 'can', 'CAN.G316.8' => 'can', 'CAN.G386.15' => 'can', 'CAN.G386.16' => 'can', 'CAN.G386.2' => 'can', 'CAN.G579.7' => 'can', 'CAN.G625.66' => 'can', 'CAN.G63.17' => 'can', 'CAN.G648.6' => 'can', 'CAN.G678.3' => 'can', 'CAN.G73.3' => 'can', 'CAN.G8.20' => 'can', 'CAN.G84.36' => 'can', 'CANSAT01G0608' => 'cansat', 'CARHR204310' => 'chi', 'CARHR256110' => 'chi', 'CARHR282070' => 'chi', 'Carub.0006s0766' => 'cru', 'Carub.0006s0767' => 'cru', 'Carub.0007s0266' => 'cru', 'Ca_23698_v3' => 'car', 'Ca_23699_v3' => 'car', 'Ca_29360_v3' => 'car', 'CBR_g41723' => 'cbr', 'Cc00_g04230' => 'ccan', 'Cc00_g13440' => 'ccan', 'Cc07_g08400' => 'ccan', 'Cc11_g09180' => 'ccan', 'CDE02G3450' => 'cde', 'CDE04G3257' => 'cde', 'CDE05G1963' => 'cde', 'CDE06G0790' => 'cde', 'CDE10G0461' => 'cde', 'Cfa015797' => 'cfa', 'Cfa019703' => 'cfa', 'Cfa021336' => 'cfa', 'Cfa021577' => 'cfa', 'Cfa025649' => 'cfa', 'Ciclev10015332m.g' => 'ccl', 'CiPaw.05G246000' => 'cil', 'CiPaw.06G014800' => 'cil', 'ClCG01G006030' => 'cla', 'ClCG02G006730' => 'cla', 'ClCG05G022310' => 'cla', 'ClCG07G007520' => 'cla', 'ClCG09G010320' => 'cla', 'ClCG10G009400' => 'cla', 'COL.COLO4_00149' => 'col', 'COL.COLO4_00374' => 'col', 'COL.COLO4_00393' => 'col', 'COL.COLO4_00521' => 'col', 'COL.COLO4_00523' => 'col', 'COL.COLO4_00557' => 'col', 'COL.COLO4_00587' => 'col', 'COL.COLO4_00600' => 'col', 'COL.COLO4_00624' => 'col', 'COL.COLO4_00824' => 'col', 'COL.COLO4_00936' => 'col', 'COL.COLO4_01002' => 'col', 'COL.COLO4_01467' => 'col', 'COL.COLO4_01555' => 'col', 'COL.COLO4_01753' => 'col', 'COL.COLO4_01856' => 'col', 'COL.COLO4_02052' => 'col', 'COL.COLO4_02195' => 'col', 'COL.COLO4_02494' => 'col', 'COL.COLO4_02602' => 'col', 'COL.COLO4_02614' => 'col', 'COL.COLO4_02623' => 'col', 'COL.COLO4_02694' => 'col', 'COL.COLO4_03023' => 'col', 'COL.COLO4_03068' => 'col', 'COL.COLO4_03164' => 'col', 'COL.COLO4_03165' => 'col', 'COL.COLO4_03177' => 'col', 'COL.COLO4_03240' => 'col', 'COL.COLO4_03249' => 'col', 'COL.COLO4_06025' => 'col', 'COL.COLO4_13012' => 'col', 'COL.COLO4_29495' => 'col', 'Cpa.g.sc2.126' => 'cpa', 'Cpa.g.sc65.97' => 'cpa', 'Cre17.g698000' => 'cre', 'CsaV3_5G028650' => 'csa', 'CsaV3_5G034810' => 'csa', 'CsaV3_UNG203700' => 'csa', 'CsaV3_UNG203710' => 'csa', 'CSS0023389' => 'camsi', 'CSS0024668' => 'camsi', 'CSS0035126' => 'camsi', 'CSS0036704' => 'camsi', 'CSS0041252' => 'camsi', 'CSS0042422' => 'camsi', 'DCAR_025888' => 'dca', 'DCAR_026760' => 'dca', 'DCAR_030187' => 'dca', 'DCAR_032490' => 'dca', 'DCAR_032491' => 'dca', 'Dinv04894' => 'din', 'Dinv16169' => 'din', 'Dinv17149' => 'din', 'Dinv26730' => 'din', 'Dinv29306' => 'din', 'Duzib248G0514' => 'dzi', 'Duzib251G0965' => 'dzi', 'Duzib268G0848' => 'dzi', 'ECA054G0001' => 'eca', 'ECA074G0011' => 'eca', 'ECA077G0003' => 'eca', 'ECA232G3198' => 'eca', 'ECA233G3020' => 'eca', 'ECA234G0246' => 'eca', 'ECA246G4096' => 'eca', 'EL10Ac2g03511' => 'bvu', 'EL10Ac3g06001' => 'bvu', 'EL10Ac3g06380' => 'bvu', 'EL10Ac4g08023' => 'bvu', 'EL10Ac4g08673' => 'bvu', 'EL10Ac5g11178' => 'bvu', 'EL10Ac5g11447' => 'bvu', 'EL10Ac6g14265' => 'bvu', 'EL10Ac7g16671' => 'bvu', 'EL10Ac8g19371' => 'bvu', 'EL10Ac8g20179' => 'bvu', 'EL10Ac8g20325' => 'bvu', 'EL10As12g24024' => 'bvu', 'EL10As15g24121' => 'bvu', 'EL10As1g23051' => 'bvu', 'EL10As5g23624' => 'bvu', 'Eucgr.B02878' => 'egr', 'Eucgr.F02916' => 'egr', 'Eucgr.G02224' => 'egr', 'Eucgr.H03409' => 'egr', 'Eucgr.J02731' => 'egr', 'Eucgr.J02738' => 'egr', 'FAN03G1876' => 'fan', 'FAN04G1806' => 'fan', 'FAN07G0747' => 'fan', 'FAN08G3337' => 'fan', 'FAN11G2261' => 'fan', 'FAN12G2285' => 'fan', 'FAN12G4056' => 'fan', 'FAN13G2606' => 'fan', 'FAN14G0148' => 'fan', 'FAN17G2762' => 'fan', 'FAN18G3405' => 'fan', 'FAN21G1134' => 'fan', 'FAN22G0920' => 'fan', 'FvH4_3g31113' => 'fve', 'FvH4_4g26290' => 'fve', 'FvH4_5g16960' => 'fve', 'FvH4_6g32350' => 'fve', 'Glyma.02G184000' => 'gma', 'Glyma.10G174800' => 'gma', 'Glyma.10G267200' => 'gma', 'Glyma.20G123600' => 'gma', 'Gohir.1Z049699' => 'ghi', 'Gohir.1Z049799' => 'ghi', 'Gohir.1Z049802' => 'ghi', 'Gohir.1Z050092' => 'ghi', 'Gohir.A01G140252' => 'ghi', 'Gohir.A01G140800' => 'ghi', 'Gohir.A04G099300' => 'ghi', 'Gohir.A04G099400' => 'ghi', 'Gohir.A09G102400' => 'ghi', 'Gohir.A09G103000' => 'ghi', 'Gohir.A09G130000' => 'ghi', 'Gohir.A10G088001' => 'ghi', 'Gohir.A10G088051' => 'ghi', 'Gohir.A11G138566' => 'ghi', 'Gohir.A11G150850' => 'ghi', 'Gohir.A12G091244' => 'ghi', 'Gohir.A12G091266' => 'ghi', 'Gohir.A12G175900' => 'ghi', 'Gohir.A13G116851' => 'ghi', 'Gohir.D01G058550' => 'ghi', 'Gohir.D01G102281' => 'ghi', 'Gohir.D01G102294' => 'ghi', 'Gohir.D01G102307' => 'ghi', 'Gohir.D01G131700' => 'ghi', 'Gohir.D02G095301' => 'ghi', 'Gohir.D03G073656' => 'ghi', 'Gohir.D04G138700' => 'ghi', 'Gohir.D04G138800' => 'ghi', 'Gohir.D07G155064' => 'ghi', 'Gohir.D11G230140' => 'ghi', 'Gohir.D12G179000' => 'ghi', 'Gohir.D13G043700' => 'ghi', 'Gorai.001G177300' => 'gra', 'Gorai.001G196000' => 'gra', 'Gorai.002G079400' => 'gra', 'Gorai.002G163300' => 'gra', 'Gorai.003G067400' => 'gra', 'Gorai.005G109000' => 'gra', 'Gorai.005G217500' => 'gra', 'Gorai.006G157000' => 'gra', 'Gorai.008G191800' => 'gra', 'Gorai.012G123700' => 'gra', 'Gorai.012G123800' => 'gra', 'Gorai.013G048500' => 'gra', 'GSVIVG01006210001' => 'vvi', 'GSVIVG01008378001' => 'vvi', 'GSVIVG01011797001' => 'vvi', 'GSVIVG01029711001' => 'vvi', 'GSVIVG01033373001' => 'vvi', 'HanXRQChr00c0339g0573791' => 'han', 'HanXRQChr00c0345g0573921' => 'han', 'HanXRQChr00c0702g0576851' => 'han', 'HanXRQChr00c0759g0577211' => 'han', 'HanXRQChr01g0000661' => 'han', 'HanXRQChr01g0009281' => 'han', 'HanXRQChr01g0020391' => 'han', 'HanXRQChr02g0041541' => 'han', 'HanXRQChr02g0044931' => 'han', 'HanXRQChr02g0056561' => 'han', 'HanXRQChr03g0073741' => 'han', 'HanXRQChr04g0100091' => 'han', 'HanXRQChr04g0112031' => 'han', 'HanXRQChr04g0120441' => 'han', 'HanXRQChr05g0151431' => 'han', 'HanXRQChr05g0162971' => 'han', 'HanXRQChr06g0170421' => 'han', 'HanXRQChr07g0191321' => 'han', 'HanXRQChr07g0194941' => 'han', 'HanXRQChr07g0200991' => 'han', 'HanXRQChr08g0210321' => 'han', 'HanXRQChr08g0212971' => 'han', 'HanXRQChr09g0238261' => 'han', 'HanXRQChr09g0262451' => 'han', 'HanXRQChr09g0268781' => 'han', 'HanXRQChr10g0277991' => 'han', 'HanXRQChr10g0283511' => 'han', 'HanXRQChr10g0284201' => 'han', 'HanXRQChr10g0289231' => 'han', 'HanXRQChr10g0295261' => 'han', 'HanXRQChr11g0326791' => 'han', 'HanXRQChr12g0377731' => 'han', 'HanXRQChr13g0388711' => 'han', 'HanXRQChr13g0406821' => 'han', 'HanXRQChr13g0412351' => 'han', 'HanXRQChr13g0413461' => 'han', 'HanXRQChr13g0413561' => 'han', 'HanXRQChr14g0459261' => 'han', 'HanXRQChr15g0466221' => 'han', 'HanXRQChr17g0567081' => 'han', 'HanXRQCPg0580001' => 'han', 'Haze_00696' => 'cav', 'Haze_18788' => 'cav', 'Haze_26366' => 'cav', 'Hma1.2p1_0114F.1_g055440' => 'hma', 'Hma1.2p1_0218F.1_g092750' => 'hma', 'Hma1.2p1_0546F.1_g176240' => 'hma', 'Hma1.2p1_1257F.1_g270790' => 'hma', 'Hma1.2p1_1593F.1_g292620' => 'hma', 'Hma1.2p1_2029F.1_g311740' => 'hma', 'Hma1.2p1_2154F.1_g315310' => 'hma', 'HPP92_011401' => 'vpl', 'HPP92_021848' => 'vpl', 'HPP92_027366' => 'vpl', 'HPP92_027367' => 'vpl', 'HPP92_028390' => 'vpl', 'HPP92_028397' => 'vpl', 'HPP92_028407' => 'vpl', 'Hund04118' => 'sun', 'Hund08787' => 'sun', 'Hund12655' => 'sun', 'Hund12656' => 'sun', 'Hund12956' => 'sun', 'Hund15470' => 'sun', 'Hund15471' => 'sun', 'Hund15472' => 'sun', 'Hund19839' => 'sun', 'Hund19840' => 'sun', 'Hund25003' => 'sun', 'Hund25006' => 'sun', 'Hund25809' => 'sun', 'Hund25915' => 'sun', 'Hund27444' => 'sun', 'Hund27486' => 'sun', 'Hund27570' => 'sun', 'Hund27600' => 'sun', 'Hund27664' => 'sun', 'Hund27873' => 'sun', 'Hund27908' => 'sun', 'Hund27976' => 'sun', 'Hund28034' => 'sun', 'Hund28093' => 'sun', 'Hund28094' => 'sun', 'Hund28100' => 'sun', 'Hund28115' => 'sun', 'Hund28168' => 'sun', 'Hund28300' => 'sun', 'Hund28450' => 'sun', 'Hund28474' => 'sun', 'Hund28494' => 'sun', 'Hund28510' => 'sun', 'Hund28669' => 'sun', 'Hund28711' => 'sun', 'Hund28723' => 'sun', 'Hund28738' => 'sun', 'Hund29130' => 'sun', 'Hund29143' => 'sun', 'Hund29174' => 'sun', 'Hund29211' => 'sun', 'Hund29364' => 'sun', 'Hund29365' => 'sun', 'Hund29461' => 'sun', 'Hund29493' => 'sun', 'Hund29638' => 'sun', 'Hund29869' => 'sun', 'Hund29870' => 'sun', 'Hund30195' => 'sun', 'Hund30345' => 'sun', 'Hund30347' => 'sun', 'Hund30396' => 'sun', 'Hund30456' => 'sun', 'Hund30509' => 'sun', 'Hund30568' => 'sun', 'Hund30596' => 'sun', 'Hund30886' => 'sun', 'Hund30927' => 'sun', 'Hund30970' => 'sun', 'Hund31130' => 'sun', 'Hund31179' => 'sun', 'Hund31205' => 'sun', 'Hund31266' => 'sun', 'Hund31300' => 'sun', 'Hund31302' => 'sun', 'Hund31337' => 'sun', 'Hund31346' => 'sun', 'Hund31409' => 'sun', 'Hund31514' => 'sun', 'Lalb_Chr02g0154581' => 'lal', 'Lalb_Chr06g0165711' => 'lal', 'Lalb_Chr07g0192671' => 'lal', 'Lalb_Chr13g0292741' => 'lal', 'Lalb_Chr13g0292751' => 'lal', 'Lalb_Chr21g0308591' => 'lal', 'Lalb_Chr21g0308601' => 'lal', 'Lalb_Chr21g0308621' => 'lal', 'Lalb_Chr21g0308641' => 'lal', 'Lalb_Chr25g0281551' => 'lal', 'Lalb_Chr25g0282011' => 'lal', 'Lalb_Chr25g0282021' => 'lal', 'Lalb_Chr25g0282031' => 'lal', 'Lj2A1233T117' => 'lonja', 'Lj2A1239T190' => 'lonja', 'Lj2C1235T31' => 'lonja', 'Lj2C1237G35' => 'lonja', 'Lj2C1239T59' => 'lonja', 'Lj3C877G4' => 'lonja', 'Lj4A180T60' => 'lonja', 'Lj4C182T12' => 'lonja', 'Lj4g0000089' => 'lja', 'Lj4g0014307' => 'lja', 'Lj5g0006532' => 'lja', 'Lj6A750T90' => 'lonja', 'Lj6P326T3' => 'lonja', 'Lj9A422T80' => 'lonja', 'LjContig00318g0012400' => 'lja', 'Lsat_1_v5_gn_1_98641' => 'lsa', 'Lsat_1_v5_gn_2_23201' => 'lsa', 'Lsat_1_v5_gn_2_89820' => 'lsa', 'Lsat_1_v5_gn_2_89840' => 'lsa', 'Lsat_1_v5_gn_3_99241' => 'lsa', 'Lsat_1_v5_gn_3_99261' => 'lsa', 'Lsat_1_v5_gn_4_102720' => 'lsa', 'Lsat_1_v5_gn_4_102740' => 'lsa', 'Lsat_1_v5_gn_4_113700' => 'lsa', 'Lsat_1_v5_gn_4_15480' => 'lsa', 'Lsat_1_v5_gn_4_156041' => 'lsa', 'Lsat_1_v5_gn_4_40420' => 'lsa', 'Lsat_1_v5_gn_4_56380' => 'lsa', 'Lsat_1_v5_gn_6_44101' => 'lsa', 'Lsat_1_v5_gn_7_68801' => 'lsa', 'Lsat_1_v5_gn_8_41680' => 'lsa', 'Lsat_1_v5_gn_9_28961' => 'lsa', 'Manes.06G062900' => 'mes', 'Manes.14G110100' => 'mes', 'Mapoly0082s0043' => 'mpo', 'MBI16_g21170_MAGBIO' => 'mbi', 'MCO01G748' => 'mco', 'MD01G1070700' => 'mdo', 'MD06G1223200' => 'mdo', 'MD10G1065600' => 'mdo', 'MD11G1295100' => 'mdo', 'MD11G1295200' => 'mdo', 'MD11G1295300' => 'mdo', 'MD13G1031500' => 'mdo', 'MD16G1033600' => 'mdo', 'Medtr0002s0650' => 'mtr', 'Medtr1829s0010' => 'mtr', 'Medtr1g076100' => 'mtr', 'Medtr1g095080' => 'mtr', 'Medtr1g108765' => 'mtr', 'Medtr1g108770' => 'mtr', 'Medtr2g009550' => 'mtr', 'Medtr2g009560' => 'mtr', 'Medtr2g066860' => 'mtr', 'Medtr2g066870' => 'mtr', 'Medtr3g035730' => 'mtr', 'Medtr3g035733' => 'mtr', 'Medtr3g065340' => 'mtr', 'Medtr3g093230' => 'mtr', 'Medtr3g099550' => 'mtr', 'Medtr3g117210' => 'mtr', 'Medtr4g010980' => 'mtr', 'Medtr4g451265' => 'mtr', 'Medtr4g451275' => 'mtr', 'Medtr5g090750' => 'mtr', 'Medtr5g090760' => 'mtr', 'Medtr6g055020' => 'mtr', 'Medtr7g021780' => 'mtr', 'Medtr7g033755' => 'mtr', 'Medtr7g033765' => 'mtr', 'Medtr7g070670' => 'mtr', 'Medtr7g117920' => 'mtr', 'Medtr7g498250' => 'mtr', 'MELO3C005329.2' => 'cme', 'MELO3C010469.2' => 'cme', 'MELO3C012292.2' => 'cme', 'MELO3C014693.2' => 'cme', 'MELO3C020640.2' => 'cme', 'MELO3C025277.2' => 'cme', 'MELO3C027174.2' => 'cme', 'Migut.D01356' => 'egut', 'Migut.D02347' => 'egut', 'Migut.E00396' => 'egut', 'Migut.E00925' => 'egut', 'Migut.E00962' => 'egut', 'Migut.E01175' => 'egut', 'Migut.E01687' => 'egut', 'Migut.L01022' => 'egut', 'MSTRG.13567' => 'ama', 'MSTRG.2196' => 'ama', 'MSTRG.876' => 'ama', 'Nitab4.5_0000140g0150' => 'nta', 'Nitab4.5_0000248g0030' => 'nta', 'Nitab4.5_0000266g0020' => 'nta', 'Nitab4.5_0000293g0030' => 'nta', 'Nitab4.5_0000350g0230' => 'nta', 'Nitab4.5_0000631g0100' => 'nta', 'Nitab4.5_0000881g0070' => 'nta', 'Nitab4.5_0001311g0170' => 'nta', 'Nitab4.5_0002456g0010' => 'nta', 'Nitab4.5_0002792g0070' => 'nta', 'Nitab4.5_0004397g0010' => 'nta', 'Nitab4.5_0005700g0050' => 'nta', 'Nitab4.5_0008209g0030' => 'nta', 'Nitab4.5_0008649g0010' => 'nta', 'Nitab4.5_0009280g0020' => 'nta', 'Nitab4.5_0009663g0030' => 'nta', 'Nitab4.5_0011927g0010' => 'nta', 'Nitab4.5_0012069g0020' => 'nta', 'Nitab4.5_0012146g0010' => 'nta', 'Nitab4.5_0013958g0010' => 'nta', 'Nitab4.5_0014158g0010' => 'nta', 'Nn010s41429' => 'nnu', 'Nn010s41449' => 'nnu', 'Nn021s41541' => 'nnu', 'Nn021s41542' => 'nnu', 'Nn021s41543' => 'nnu', 'Nn1g03013' => 'nnu', 'Nn1g07749' => 'nnu', 'Nn263s45940' => 'nnu', 'Nn265s45950' => 'nnu', 'Nn2g12326' => 'nnu', 'Nn3g18019' => 'nnu', 'Nn3g18718' => 'nnu', 'Nn4g24047' => 'nnu', 'Nn5g30878' => 'nnu', 'Nn7g36651' => 'nnu', 'Oeu000869.1' => 'oeu', 'Oeu004320.2' => 'oeu', 'Oeu004819.1' => 'oeu', 'Oeu012838.1' => 'oeu', 'Oeu020978.1' => 'oeu', 'Oeu028779.1' => 'oeu', 'Oeu028780.1' => 'oeu', 'Oeu029163.1' => 'oeu', 'Oeu034676.1' => 'oeu', 'Oeu036130.1' => 'oeu', 'Oeu044322.1' => 'oeu', 'Oeu046457.1' => 'oeu', 'Oeu049997.1' => 'oeu', 'Oeu050821.1' => 'oeu', 'Oeu058369.1' => 'oeu', 'Oeu059510.2' => 'oeu', 'Oeu062836.1' => 'oeu', 'Oeu062865.1' => 'oeu', 'Oeu062878.3' => 'oeu', 'Oeu064206.1' => 'oeu', 'Os01g0685800' => 'osa', 'Os05g0553000' => 'osa', 'Os06g0120732' => 'osa', 'Os10g0355800' => 'osa', 'Os12g0207500' => 'osa', 'Peaxi162Scf00075g01711' => 'pax', 'Peaxi162Scf00205g00919' => 'pax', 'Peaxi162Scf00334g01212' => 'pax', 'Peaxi162Scf00405g00135' => 'pax', 'Peaxi162Scf00428g00114' => 'pax', 'Peaxi162Scf00608g00016' => 'pax', 'Peaxi162Scf00759g00035' => 'pax', 'Peaxi162Scf00897g00015' => 'pax', 'Peaxi162Scf03976g00009' => 'pax', 'PGR102G0016' => 'pgr', 'PGR111G0027' => 'pgr', 'PGR111G0097' => 'pgr', 'PGR119G0396' => 'pgr', 'PGR119G0857' => 'pgr', 'PGSC0003DMG400001014' => 'stu', 'PGSC0003DMG400005994' => 'stu', 'PGSC0003DMG400025106' => 'stu', 'PGSC0003DMG400030560' => 'stu', 'PGSC0003DMG400030594' => 'stu', 'PGSC0003DMG400034122' => 'stu', 'Phvul.004G121666' => 'pvu', 'Phvul.005G040400' => 'pvu', 'Phvul.007G034800' => 'pvu', 'Potri.007G062122' => 'ptr', 'Potri.007G062142' => 'ptr', 'Potri.008G126600' => 'ptr', 'Potri.010G116600' => 'ptr', 'Potri.013G162800' => 'ptr', 'Pp3c5_26340' => 'ppa', 'Pp3c5_26350' => 'ppa', 'Pp3c6_4230' => 'ppa', 'PRCOL_00002886' => 'pco', 'Prupe.1G320700' => 'ppe', 'Prupe.5G228300' => 'ppe', 'Psat0s1638g0040' => 'psa', 'Psat0s1661g0080' => 'psa', 'Psat2g136800' => 'psa', 'Psat4g098720' => 'psa', 'Psat6g221360' => 'psa', 'PSO210G2163' => 'pso', 'PSO210G3223' => 'pso', 'PSO548G0022' => 'pso', 'PSO548G0091' => 'pso', 'PSO706G0005' => 'pso', 'QL01p002804' => 'qlo', 'QL10p027324' => 'qlo', 'QL93p0311_0023' => 'qlo', 'RcHm_v2.0_Chr3g0497001' => 'rch', 'RcHm_v2.0_Chr4g0433891' => 'rch', 'RcHm_v2.0_Chr7g0179061' => 'rch', 'RcHm_v2.0_Chr7g0228781' => 'rch', 'RcHm_v2.0_Chr7g0228791' => 'rch', 'RcHm_v2.0_Chr7g0228801' => 'rch', 'RcHm_v2.0_CPg0502121' => 'rch', 'RcHm_v2.0_CPg0502131' => 'rch', 'Rhsim09G0069100' => 'rsi', 'Rhsim09G0101500' => 'rsi', 'Rhsim10G0077100' => 'rsi', 'Rhsim10G0077400' => 'rsi', 'RhsimPtG0000900' => 'rsi', 'Sabra08G0095600' => 'sbr', 'Sabra10G0086300' => 'sbr', 'Sabra10G0088000' => 'sbr', 'SalBow1G0643' => 'sbo', 'SalBow1G8499' => 'sbo', 'SalBow3G4545' => 'sbo', 'SalBow8G3743' => 'sbo', 'Sc03g0005170' => 'sci', 'Sc03g0005180' => 'sci', 'Sc04g0005800' => 'sci', 'Sc12g0007880' => 'sci', 'Sc12g0007890' => 'sci', 'Sc13g0007370' => 'sci', 'Sc14g0007230' => 'sci', 'Sc16g0004740' => 'sci', 'Sc16g0004750' => 'sci', 'Sc16g0004760' => 'sci', 'Sc19g0005980' => 'sci', 'Sc20g0001970' => 'sci', 'Sc25g0001970' => 'sci', 'Sed0007524' => 'sed', 'Sed0011550' => 'sed', 'Sed0015951' => 'sed', 'Sed0018815' => 'sed', 'Sed0019341' => 'sed', 'Sed0022660' => 'sed', 'Sed0023375' => 'sed', 'Sed0024286' => 'sed', 'SEGI_02092' => 'sgi', 'SEGI_03542' => 'sgi', 'SEGI_06987' => 'sgi', 'SEGI_17558' => 'sgi', 'SEGI_20135' => 'sgi', 'SEGI_21136' => 'sgi', 'SEGI_21323' => 'sgi', 'SEGI_23109' => 'sgi', 'SEGI_34805' => 'sgi', 'SGA_v2.0_scaffold181G39725' => 'sas', 'SGA_v2.0_scaffold197G41017' => 'sas', 'SGA_v2.0_scaffold38G15040' => 'sas', 'SGA_v2.0_scaffold38G15043' => 'sas', 'SGA_v2.0_scaffold477G52214' => 'sas', 'SGA_v2.0_scaffold50G18540' => 'sas', 'SHI16317' => 'shi', 'SMO086G0005' => 'smo', 'SMO086G0043' => 'smo', 'SMO367G0560' => 'smo', 'Solyc00g500064.1' => 'sly', 'Solyc00g500140.1' => 'sly', 'Solyc01g017220.2' => 'sly', 'Solyc02g091130.3' => 'sly', 'Solyc04g007550.4' => 'sly', 'Solyc04g039850.1' => 'sly', 'Solyc05g008460.4' => 'sly', 'Solyc07g021180.3' => 'sly', 'Solyc07g062000.2' => 'sly', 'Solyc12g006210.1' => 'sly', 'Solyc12g042230.3' => 'sly', 'Solyc12g062530.3' => 'sly', 'Sopen02g035780' => 'spe', 'Sopen04g002630' => 'spe', 'Sopen04g009090' => 'spe', 'Sopen05g004290' => 'spe', 'Sopen10g009170' => 'spe', 'Sopen10g009220' => 'spe', 'Sopen12g014980' => 'spe', 'Sopen12g025750' => 'spe', 'Sp6g34170' => 'spa', 'Sp6g34180' => 'spa', 'Sp6g34190' => 'spa', 'TAR374G0958' => 'tar', 'TAR622G0773' => 'tar', 'TAR625G0544' => 'tar', 'TAR629G2191' => 'tar', 'TAR636G1507' => 'tar', 'THA.LOC104800260' => 'tha', 'THA.LOC104800267' => 'tha', 'THA.LOC104800291' => 'tha', 'Thecc.02G216900' => 'tca', 'Thhalv10011087m.g' => 'esa', 'Thhalv10013084m.g' => 'esa', 'Thhalv10013168m.g' => 'esa', 'Thhalv10014065m.g' => 'esa', 'TPR.G20539' => 'tpr', 'TPR.G2827' => 'tpr', 'TPR.G4860' => 'tpr', 'TWI14G1158' => 'twi', 'TWI31G1312' => 'twi', 'TWI75G1293' => 'twi', 'TWI75G1558' => 'twi', 'TWI77G0365' => 'twi', 'TWI79G1565' => 'twi', 'unitig_27.g25259' => 'ugi', 'unitig_699.g19527' => 'ugi', 'unitig_87.g27943' => 'ugi', 'unitig_91.g26506' => 'ugi', 'vmacro01427' => 'vma', 'vmacro05490' => 'vma', 'vmacro10620' => 'vma', 'vmacro22412' => 'vma', 'VMungo0354G0001' => 'vmu', 'VMungo0720G1601' => 'vmu', 'VMungo1309G0166' => 'vmu', 'VMungo1383G0654' => 'vmu', 'VMungo1383G3700' => 'vmu', 'Zm00001eb039130' => 'zma', 'Zm00001eb039140' => 'zma', 'Zm00001eb105270' => 'zma', 'Zm00001eb156500' => 'zma', 'Zm00001eb180500' => 'zma', 'Zm00001eb295050' => 'zma', 'Zm00001eb343030' => 'zma', 'Zm00001eb434920' => 'zma', 'Zm00001eb435040' => 'zma', 'Zm00001eb435050' => 'zma', 'Zm00001eb435190' => 'zma', 'Zm00001eb435200' => 'zma', 'Zm00001eb435400' => 'zma', 'Zm00001eb435660' => 'zma', 'Zm00001eb436760' => 'zma' ) $gf_id = 'HOM05D000680' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000680' ) $data_identifier = 'HOM05D000680' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 15, 'aar' => (int) 3, 'aag' => (int) 1, 'ach' => (int) 10, 'amhyb' => (int) 5, 'aly' => (int) 7, 'aox' => (int) 1, 'arhy' => (int) 13, 'ath' => (int) 5, 'atr' => (int) 13, 'acertr' => (int) 4, 'cqu' => (int) 8, 'bca' => (int) 20, 'bol' => (int) 23, 'bra' => (int) 17, 'can' => (int) 31, 'cansat' => (int) 1, 'chi' => (int) 3, 'cru' => (int) 3, 'car' => (int) 3, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 5, 'ccl' => (int) 1, 'cil' => (int) 2, 'cla' => (int) 6, 'col' => (int) 33, 'cpa' => (int) 2, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 6, 'dca' => (int) 5, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 7, 'bvu' => (int) 16, 'egr' => (int) 6, 'fan' => (int) 13, 'fve' => (int) 4, 'gma' => (int) 4, 'ghi' => (int) 32, 'gra' => (int) 12, 'vvi' => (int) 5, 'han' => (int) 41, 'cav' => (int) 3, 'hma' => (int) 7, 'vpl' => (int) 7, 'sun' => (int) 69, 'lal' => (int) 13, 'lonja' => (int) 11, 'lja' => (int) 4, 'lsa' => (int) 17, 'mes' => (int) 2, 'mpo' => (int) 1, 'mbi' => (int) 1, 'mco' => (int) 1, 'mdo' => (int) 8, 'mtr' => (int) 28, 'cme' => (int) 7, 'egut' => (int) 8, 'ama' => (int) 3, 'nta' => (int) 21, 'nnu' => (int) 15, 'oeu' => (int) 20, 'osa' => (int) 5, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 6, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 2, 'psa' => (int) 5, 'pso' => (int) 5, 'qlo' => (int) 3, 'rch' => (int) 8, 'rsi' => (int) 5, 'sbr' => (int) 3, 'sbo' => (int) 4, 'sci' => (int) 13, 'sed' => (int) 8, 'sgi' => (int) 9, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 12, 'spe' => (int) 8, 'spa' => (int) 3, 'tar' => (int) 5, 'tha' => (int) 3, 'tca' => (int) 1, 'esa' => (int) 4, 'tpr' => (int) 3, 'twi' => (int) 6, 'ugi' => (int) 4, 'vma' => (int) 4, 'vmu' => (int) 5, 'zma' => (int) 15 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb436760' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1